Protein : Qrob_P0200740.2 Q. robur
Protein Identifier  ? Qrob_P0200740.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) PTHR10261 - COATOMER SUBUNIT GAMMA Gene Prediction Quality  validated
Protein length 

Sequence

Length: 175  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0005198 structural molecule activity The action of a molecule that contributes to the structural integrity of a complex or assembly within or outside a cell.
GO:0030117 membrane coat Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules.
GO:0030126 COPI vesicle coat One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1674930 44 152 + 109 none 12.29 887 77.06 8e-51 coatomer gamma subunit putative
blastp_kegg lcl|pvu:PHAVU_011G046000g 45 152 + 108 none 12.18 887 77.78 2e-50 hypothetical protein
blastp_kegg lcl|sot:102583052 44 148 + 105 none 11.85 886 79.05 7e-50 coatomer subunit gamma-like
blastp_kegg lcl|gmx:100789362 45 148 + 104 none 11.72 887 79.81 1e-49 coatomer subunit gamma-2-like
blastp_kegg lcl|pop:POPTR_0004s16090g 44 152 + 109 none 12.32 885 73.39 1e-49 POPTRDRAFT_818088 hypothetical protein
blastp_kegg lcl|tcc:TCM_006902 44 148 + 105 none 11.84 887 80.00 2e-49 Coatomer gamma-2 subunit / gamma-2 coat protein / gamma-2 COP putative isoform 1
blastp_kegg lcl|cmo:103489587 44 148 + 105 none 11.84 887 77.14 3e-49 coatomer subunit gamma
blastp_kegg lcl|vvi:100853178 44 152 + 109 none 12.29 887 75.23 3e-49 coatomer subunit gamma-2-like
blastp_kegg lcl|sly:101263943 44 148 + 105 none 11.85 886 78.10 4e-49 coatomer subunit gamma-2-like
blastp_kegg lcl|gmx:100784608 45 152 + 108 none 12.24 882 75.00 4e-49 coatomer subunit gamma-like
blastp_pdb 1r4x_A 42 156 + 115 Gaps:2 42.55 275 44.44 3e-24 mol:protein length:275 Coatomer gamma subunit
blastp_pdb 1pzd_A 62 160 + 99 Gaps:2 31.37 322 48.51 5e-24 mol:protein length:322 Coatomer gamma subunit
blastp_uniprot_sprot sp|Q6Z382|COPG2_ORYSJ 45 145 + 101 none 11.36 889 75.25 4e-46 Coatomer subunit gamma-2 OS Oryza sativa subsp. japonica GN Os07g0201100 PE 2 SV 1
blastp_uniprot_sprot sp|Q0WW26|COPG_ARATH 44 148 + 105 none 11.85 886 73.33 4e-46 Coatomer subunit gamma OS Arabidopsis thaliana GN At4g34450 PE 1 SV 2
blastp_uniprot_sprot sp|Q8H852|COPG1_ORYSJ 44 145 + 102 none 11.54 884 68.63 3e-42 Coatomer subunit gamma-1 OS Oryza sativa subsp. japonica GN Os03g0227000 PE 2 SV 2
blastp_uniprot_sprot sp|Q9Y678|COPG1_HUMAN 42 160 + 119 Gaps:2 13.84 874 43.80 9e-23 Coatomer subunit gamma-1 OS Homo sapiens GN COPG1 PE 1 SV 1
blastp_uniprot_sprot sp|P53620|COPG1_BOVIN 42 160 + 119 Gaps:2 13.84 874 42.98 2e-22 Coatomer subunit gamma-1 OS Bos taurus GN COPG1 PE 1 SV 1
blastp_uniprot_sprot sp|Q4AEF8|COPG1_RAT 42 160 + 119 Gaps:2 13.84 874 41.32 4e-21 Coatomer subunit gamma-1 OS Rattus norvegicus GN Copg1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9QZE5|COPG1_MOUSE 42 160 + 119 Gaps:2 13.84 874 40.50 8e-20 Coatomer subunit gamma-1 OS Mus musculus GN Copg1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9I8E6|COPG2_TAKRU 41 150 + 110 Gaps:2 12.83 873 40.18 9e-19 Coatomer subunit gamma-2 OS Takifugu rubripes GN copg2 PE 3 SV 1
blastp_uniprot_sprot sp|Q9PUE4|COPG2_DANRE 41 148 + 108 Gaps:2 12.60 873 40.91 1e-18 Coatomer subunit gamma-2 OS Danio rerio GN copg2 PE 2 SV 2
blastp_uniprot_sprot sp|Q9UBF2|COPG2_HUMAN 41 150 + 110 Gaps:2 12.86 871 39.29 7e-18 Coatomer subunit gamma-2 OS Homo sapiens GN COPG2 PE 1 SV 1
rpsblast_cdd gnl|CDD|204051 44 148 + 105 Gaps:4 39.78 269 45.79 3e-28 pfam08752 Gamma-COP Coatomer gamma subunit appendage domain. COPI-coated vesicles function in retrograde transport from the Golgi to the ER and in intra-Golgi transport. This domain corresponds to the coatomer gamma subunit appendage domain. It contains a protein-protein interaction site and a second proposed binding site that interacts with the alpha beta epsilon COPI subcomplex.
rpsblast_cdd gnl|CDD|34837 71 145 + 75 none 8.35 898 29.33 4e-09 COG5240 SEC21 Vesicle coat complex COPI gamma subunit [Intracellular trafficking and secretion].
rpsblast_kog gnl|CDD|36294 40 148 + 109 Gaps:2 12.83 865 42.34 5e-26 KOG1078 KOG1078 KOG1078 Vesicle coat complex COPI gamma subunit [Intracellular trafficking secretion and vesicular transport].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 44 124 81 G3DSA:2.60.40.1480 none none IPR013040
Pfam 44 125 82 PF08752 none Coatomer gamma subunit appendage platform subdomain IPR013040
PANTHER 44 151 108 PTHR10261 none none IPR017106
Gene3D 126 149 24 G3DSA:3.30.310.30 none none IPR015873
SUPERFAMILY 42 128 87 SSF49348 none none IPR013041

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 26   Mitochondrion 3 0.037 0.772 NON-PLANT 26