Protein : Qrob_P0197990.2 Q. robur
Protein Identifier  ? Qrob_P0197990.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) 5.4.99.23 - 23S rRNA pseudouridine(1911/1915/1917) synthase. Code Enzyme  EC:5.4.99.23
Gene Prediction Quality  validated Protein length 

Sequence

Length: 444  
Kegg Orthology  K15452
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0001522 pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
GO:0009451 RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
GO:0009982 pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102619972 64 439 + 376 Gaps:8 87.41 421 83.42 0.0 RNA pseudouridine synthase 2 chloroplastic-like
blastp_kegg lcl|pop:POPTR_0002s01830g 1 441 + 441 Gaps:27 93.24 444 75.36 0.0 POPTRDRAFT_642899 pseudouridine synthase family protein
blastp_kegg lcl|tcc:TCM_034292 7 436 + 430 Gaps:10 97.92 433 71.70 0.0 Pseudouridine synthase family protein isoform 1
blastp_kegg lcl|vvi:100852977 4 436 + 433 Gaps:13 98.38 433 73.24 0.0 RNA pseudourine synthase 2 chloroplastic-like
blastp_kegg lcl|cmo:103488386 15 437 + 423 Gaps:10 97.68 431 71.73 0.0 RNA pseudouridine synthase 2 chloroplastic
blastp_kegg lcl|csv:101213921 15 441 + 427 Gaps:9 94.04 453 70.19 0.0 RNA pseudourine synthase 2 chloroplastic-like
blastp_kegg lcl|csv:101226145 15 441 + 427 Gaps:10 94.03 452 70.59 0.0 RNA pseudourine synthase 2 chloroplastic-like
blastp_kegg lcl|sly:101246422 26 437 + 412 Gaps:10 96.79 436 69.19 0.0 RNA pseudourine synthase 2 chloroplastic-like
blastp_kegg lcl|sot:102581156 13 438 + 426 Gaps:8 98.84 431 69.25 0.0 RNA pseudouridine synthase 2 chloroplastic-like
blastp_kegg lcl|cam:101499072 10 435 + 426 Gaps:22 97.72 438 69.16 0.0 RNA pseudourine synthase 2 chloroplastic-like
blastp_pdb 2ist_A 69 430 + 362 Gaps:53 95.08 325 38.19 2e-47 mol:protein length:325 Ribosomal large subunit pseudouridine synthas
blastp_pdb 1v9f_A 69 430 + 362 Gaps:53 95.08 325 38.19 2e-47 mol:protein length:325 Ribosomal large subunit pseudouridine synthas
blastp_pdb 1qyu_A 69 430 + 362 Gaps:53 88.54 349 38.19 3e-47 mol:protein length:349 Ribosomal large subunit pseudouridine synthas
blastp_pdb 1prz_A 140 430 + 291 Gaps:53 94.44 252 41.18 1e-37 mol:protein length:252 Ribosomal large subunit pseudouridine synthas
blastp_pdb 1xpi_B 150 430 + 281 Gaps:61 96.10 231 36.04 2e-20 mol:protein length:231 Ribosomal large subunit pseudouridine synthas
blastp_pdb 1xpi_A 150 430 + 281 Gaps:61 96.10 231 36.04 2e-20 mol:protein length:231 Ribosomal large subunit pseudouridine synthas
blastp_pdb 1v9k_B 150 430 + 281 Gaps:61 97.37 228 35.59 3e-20 mol:protein length:228 Ribosomal large subunit pseudouridine synthas
blastp_pdb 1v9k_A 150 430 + 281 Gaps:61 97.37 228 35.59 3e-20 mol:protein length:228 Ribosomal large subunit pseudouridine synthas
blastp_pdb 2i82_D 234 422 + 189 Gaps:31 73.73 217 38.12 2e-17 mol:protein length:217 Ribosomal large subunit pseudouridine synthas
blastp_pdb 2i82_C 234 422 + 189 Gaps:31 73.73 217 38.12 2e-17 mol:protein length:217 Ribosomal large subunit pseudouridine synthas
blastp_uniprot_sprot sp|Q3ECD0|PUS2_ARATH 37 433 + 397 Gaps:8 90.93 430 69.05 0.0 RNA pseudouridine synthase 2 chloroplastic OS Arabidopsis thaliana GN At1g76050 PE 2 SV 1
blastp_uniprot_sprot sp|Q5Z8P2|PUS2_ORYSJ 62 432 + 371 Gaps:8 84.72 445 64.99 1e-170 RNA pseudouridine synthase 2 chloroplastic OS Oryza sativa subsp. japonica GN Os06g0717400 PE 2 SV 1
blastp_uniprot_sprot sp|Q45480|YLYB_BACSU 83 433 + 351 Gaps:63 95.05 303 48.26 2e-67 Uncharacterized RNA pseudouridine synthase YlyB OS Bacillus subtilis (strain 168) GN ylyB PE 3 SV 3
blastp_uniprot_sprot sp|P50513|RLUD_ZYMMO 83 429 + 347 Gaps:53 93.38 317 46.96 2e-64 Ribosomal large subunit pseudouridine synthase D OS Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN rluD PE 3 SV 2
blastp_uniprot_sprot sp|O50310|Y723_CHLP8 74 434 + 361 Gaps:51 98.47 327 41.93 8e-63 Uncharacterized RNA pseudouridine synthase Cpar_0723 OS Chlorobaculum parvum (strain NCIB 8327) GN Cpar_0723 PE 3 SV 1
blastp_uniprot_sprot sp|P74346|Y1629_SYNY3 82 431 + 350 Gaps:57 89.60 327 42.66 8e-60 Uncharacterized RNA pseudouridine synthase slr1629 OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN slr1629 PE 3 SV 1
blastp_uniprot_sprot sp|Q45826|Y901_CHLAA 83 430 + 348 Gaps:64 89.87 316 44.37 8e-58 Uncharacterized RNA pseudouridine synthase Caur_0901 OS Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN Caur_0901 PE 3 SV 2
blastp_uniprot_sprot sp|Q9CKA6|RLUD_PASMU 69 430 + 362 Gaps:53 95.37 324 37.86 6e-53 Ribosomal large subunit pseudouridine synthase D OS Pasteurella multocida (strain Pm70) GN rluD PE 3 SV 1
blastp_uniprot_sprot sp|O67638|Y1758_AQUAE 83 431 + 349 Gaps:52 93.99 316 39.39 1e-52 Uncharacterized RNA pseudouridine synthase aq_1758 OS Aquifex aeolicus (strain VF5) GN aq_1758 PE 3 SV 1
blastp_uniprot_sprot sp|Q87S65|RLUD_VIBPA 83 431 + 349 Gaps:53 91.08 325 40.54 4e-51 Ribosomal large subunit pseudouridine synthase D OS Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN rluD PE 3 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 234 248 15 PS01129 none Rlu family of pseudouridine synthase signature. IPR006224
SUPERFAMILY 142 186 45 SSF55120 none none IPR020103
SUPERFAMILY 224 430 207 SSF55120 none none IPR020103
PANTHER 75 183 109 PTHR10436 none none none
SUPERFAMILY 81 169 89 SSF55174 none none none
PANTHER 219 430 212 PTHR10436 none none none
Pfam 156 348 193 PF00849 none RNA pseudouridylate synthase IPR006145
Pfam 83 129 47 PF01479 none S4 domain IPR002942
PANTHER 219 430 212 PTHR10436:SF88 none none none
SMART 82 147 66 SM00363 none S4 RNA-binding domain IPR002942
Gene3D 82 130 49 G3DSA:3.10.290.10 none none IPR002942
ProSiteProfiles 82 155 74 PS50889 none S4 RNA-binding domain profile. IPR002942
PANTHER 75 183 109 PTHR10436:SF88 none none none

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 13 12

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 26   Mitochondrion 3 0.005 0.798 NON-PLANT 26