Protein : Qrob_P0196370.2 Q. robur
Protein Identifier  ? Qrob_P0196370.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=17) K05658 - ATP-binding cassette, subfamily B (MDR/TAP), member 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1328  
Kegg Orthology  K05658
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_004938 1 1326 + 1326 Gaps:39 99.92 1292 82.34 0.0 ATP binding cassette subfamily B4 isoform 1
blastp_kegg lcl|pop:POPTR_0014s10880g 1 1326 + 1326 Gaps:37 99.92 1294 81.98 0.0 POPTRDRAFT_834831 hypothetical protein
blastp_kegg lcl|vvi:100267452 1 1326 + 1326 Gaps:39 100.00 1297 80.96 0.0 ABC transporter B family member 11-like
blastp_kegg lcl|pmum:103327260 1 1326 + 1326 Gaps:40 99.92 1297 81.56 0.0 ABC transporter B family member 11-like
blastp_kegg lcl|gmx:100800034 1 1327 + 1327 Gaps:47 100.00 1282 81.98 0.0 ABC transporter B family member 4-like
blastp_kegg lcl|pper:PRUPE_ppa000313mg 1 1326 + 1326 Gaps:44 99.77 1295 81.42 0.0 hypothetical protein
blastp_kegg lcl|gmx:100777909 1 1327 + 1327 Gaps:47 100.00 1282 81.51 0.0 ABC transporter B family member 21-like
blastp_kegg lcl|cam:101489402 1 1327 + 1327 Gaps:52 100.00 1283 80.98 0.0 ABC transporter B family member 21-like
blastp_kegg lcl|mtr:MTR_1g086080 10 1327 + 1318 Gaps:49 99.22 1289 81.24 0.0 ABC transporter B family member
blastp_kegg lcl|pxb:103953074 1 1326 + 1326 Gaps:37 99.92 1296 80.39 0.0 ABC transporter B family member 11
blastp_pdb 3g5u_B 34 1327 + 1294 Gaps:149 96.50 1284 51.01 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g5u_A 34 1327 + 1294 Gaps:149 96.50 1284 51.01 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g61_B 34 1327 + 1294 Gaps:149 96.50 1284 50.93 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g61_A 34 1327 + 1294 Gaps:149 96.50 1284 50.93 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_B 34 1327 + 1294 Gaps:149 96.50 1284 50.93 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_A 34 1327 + 1294 Gaps:149 96.50 1284 50.93 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 2yl4_A 106 1318 + 1213 Gaps:62 88.24 595 51.62 2e-111 mol:protein length:595 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10
blastp_pdb 4aa3_A 106 1318 + 1213 Gaps:62 84.81 619 51.43 5e-110 mol:protein length:619 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10
blastp_pdb 3b60_D 157 1317 + 1161 Gaps:71 86.94 582 46.84 5e-90 mol:protein length:582 Lipid A export ATP-binding/permease protein m
blastp_pdb 3b60_C 157 1317 + 1161 Gaps:71 86.94 582 46.84 5e-90 mol:protein length:582 Lipid A export ATP-binding/permease protein m
blastp_uniprot_sprot sp|Q9FWX7|AB11B_ARATH 48 1325 + 1278 Gaps:49 96.95 1278 76.35 0.0 ABC transporter B family member 11 OS Arabidopsis thaliana GN ABCB11 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M1Q9|AB21B_ARATH 4 1326 + 1323 Gaps:56 99.46 1296 74.86 0.0 ABC transporter B family member 21 OS Arabidopsis thaliana GN ABCB21 PE 1 SV 2
blastp_uniprot_sprot sp|O80725|AB4B_ARATH 49 1326 + 1278 Gaps:40 96.58 1286 75.44 0.0 ABC transporter B family member 4 OS Arabidopsis thaliana GN ABCB4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FWX8|AB12B_ARATH 12 1326 + 1315 Gaps:59 99.92 1273 73.19 0.0 ABC transporter B family member 12 OS Arabidopsis thaliana GN ABCB12 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SYI3|AB5B_ARATH 39 1325 + 1287 Gaps:63 99.84 1230 72.64 0.0 ABC transporter B family member 5 OS Arabidopsis thaliana GN ABCB5 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SYI2|AB3B_ARATH 44 1326 + 1283 Gaps:65 99.92 1229 72.80 0.0 ABC transporter B family member 3 OS Arabidopsis thaliana GN ABCB3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M0M2|AB9B_ARATH 36 1325 + 1290 Gaps:57 99.92 1236 66.96 0.0 ABC transporter B family member 9 OS Arabidopsis thaliana GN ABCB9 PE 3 SV 2
blastp_uniprot_sprot sp|Q9FHF1|AB7B_ARATH 38 1325 + 1288 Gaps:91 98.64 1248 65.64 0.0 ABC transporter B family member 7 OS Arabidopsis thaliana GN ABCB7 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LJX0|AB19B_ARATH 9 1326 + 1318 Gaps:84 99.68 1252 51.04 0.0 ABC transporter B family member 19 OS Arabidopsis thaliana GN ABCB19 PE 1 SV 1
blastp_uniprot_sprot sp|Q54BT3|ABCB2_DICDI 8 1319 + 1312 Gaps:182 93.20 1397 51.08 0.0 ABC transporter B family member 2 OS Dictyostelium discoideum GN abcB2 PE 3 SV 1

46 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 484 1323 840 PTHR24221 none none none
ProSitePatterns 1222 1236 15 PS00211 none ABC transporters family signature. IPR017871
Phobius 1 63 63 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 423 659 237 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
Phobius 115 135 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 1101 1250 150 PF00005 none ABC transporter IPR003439
Pfam 442 590 149 PF00005 none ABC transporter IPR003439
Phobius 918 981 64 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 68 388 321 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
SUPERFAMILY 751 1062 312 SSF90123 none none IPR011527
Phobius 1043 1327 285 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 982 1001 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 216 240 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 484 1323 840 PTHR24221:SF138 none none none
Phobius 758 789 32 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 241 245 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 348 757 410 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 136 215 80 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 761 1031 271 PF00664 none ABC transporter transmembrane region IPR011527
Pfam 221 376 156 PF00664 none ABC transporter transmembrane region IPR011527
Pfam 67 188 122 PF00664 none ABC transporter transmembrane region IPR011527
Phobius 64 88 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 220 407 188 SSF90123 none none IPR011527
Phobius 89 114 26 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SMART 1109 1302 194 SM00382 none ATPases associated with a variety of cellular activities IPR003593
SMART 450 642 193 SM00382 none ATPases associated with a variety of cellular activities IPR003593
ProSitePatterns 562 576 15 PS00211 none ABC transporters family signature. IPR017871
Phobius 268 323 56 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1021 1042 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 824 889 66 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

11 Localization

Analysis Start End Length
TMHMM 802 824 22
TMHMM 986 1008 22
TMHMM 115 137 22
TMHMM 218 240 22
TMHMM 760 782 22
TMHMM 323 345 22
TMHMM 893 915 22
TMHMM 365 387 22
TMHMM 64 86 22
TMHMM 245 267 22
TMHMM 1021 1043 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting