Protein : Qrob_P0195080.2 Q. robur
Protein Identifier  ? Qrob_P0195080.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) KOG3796 - Ammonium transporter RHBG [Intracellular trafficking secretion and vesicular transport General function prediction only]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 739  
Kegg Orthology  K03320
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0008519 ammonium transmembrane transporter activity Enables the transfer of ammonium from one side of a membrane to the other. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
GO:0015696 ammonium transport The directed movement of ammonium into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
GO:0072488 ammonium transmembrane transport The directed movement of ammonium across a membrane by means of some agent such as a transporter or pore. Ammonium is the cation NH4+.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101306286 4 718 + 715 Gaps:1 96.34 492 83.54 0.0 ammonium transporter 1 member 1-like
blastp_kegg lcl|tcc:TCM_003850 1 738 + 738 Gaps:19 94.78 517 81.43 0.0 Ammonium transporter 1 member 4
blastp_kegg lcl|cic:CICLE_v10023800mg 6 732 + 727 Gaps:7 99.18 490 82.51 0.0 hypothetical protein
blastp_kegg lcl|cit:102629580 6 732 + 727 Gaps:7 99.18 490 82.51 0.0 ammonium transporter 1 member 4-like
blastp_kegg lcl|pop:POPTR_0002s25630g 1 726 + 726 Gaps:6 99.18 489 80.82 0.0 POPTRDRAFT_645545 ammonium transporter 3 family protein
blastp_kegg lcl|cam:101492628 3 727 + 725 Gaps:3 98.99 493 79.30 0.0 ammonium transporter 1 member 4-like
blastp_kegg lcl|rcu:RCOM_1243420 3 718 + 716 Gaps:3 98.15 486 82.18 0.0 ammonium transporter putative
blastp_kegg lcl|mtr:MTR_7g098930 4 717 + 714 Gaps:3 99.80 490 80.37 0.0 Ammonium transporter 1 member
blastp_kegg lcl|vvi:100258016 4 733 + 730 Gaps:10 96.81 502 80.45 0.0 ammonium transporter 1 member 1-like
blastp_kegg lcl|cmo:103489828 4 717 + 714 Gaps:5 98.76 482 81.93 0.0 ammonium transporter 1 member 2
blastp_pdb 2ns1_A 47 714 + 668 Gaps:74 96.36 412 33.00 4e-40 mol:protein length:412 Ammonia channel
blastp_pdb 1xqf_A 47 714 + 668 Gaps:74 94.98 418 33.00 5e-40 mol:protein length:418 Probable ammonium transporter
blastp_pdb 1xqe_A 47 714 + 668 Gaps:74 94.98 418 33.00 5e-40 mol:protein length:418 Probable ammonium transporter
blastp_pdb 3c1g_A 47 714 + 668 Gaps:74 93.63 424 33.00 5e-40 mol:protein length:424 Ammonia channel
blastp_pdb 2nop_A 47 714 + 668 Gaps:74 93.63 424 33.00 5e-40 mol:protein length:424 Ammonia channel
blastp_pdb 2nmr_A 47 714 + 668 Gaps:74 93.63 424 33.00 5e-40 mol:protein length:424 Ammonia channel
blastp_pdb 2nuu_F 47 714 + 668 Gaps:74 95.66 415 33.00 5e-40 mol:protein length:415 Ammonia channel
blastp_pdb 2nuu_E 47 714 + 668 Gaps:74 95.66 415 33.00 5e-40 mol:protein length:415 Ammonia channel
blastp_pdb 2nuu_D 47 714 + 668 Gaps:74 95.66 415 33.00 5e-40 mol:protein length:415 Ammonia channel
blastp_pdb 2nuu_C 47 714 + 668 Gaps:74 95.66 415 33.00 5e-40 mol:protein length:415 Ammonia channel
blastp_uniprot_sprot sp|O04161|AMT12_SOLLC 3 717 + 715 Gaps:8 93.19 514 79.33 0.0 Ammonium transporter 1 member 2 OS Solanum lycopersicum GN AMT1-2 PE 2 SV 1
blastp_uniprot_sprot sp|P58905|AMT11_SOLLC 7 733 + 727 Gaps:13 98.77 488 79.88 0.0 Ammonium transporter 1 member 1 OS Solanum lycopersicum GN AMT1-1 PE 2 SV 1
blastp_uniprot_sprot sp|P54144|AMT11_ARATH 7 735 + 729 Gaps:13 97.41 501 77.87 0.0 Ammonium transporter 1 member 1 OS Arabidopsis thaliana GN AMT1-1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SQH9|AMT13_ARATH 7 735 + 729 Gaps:21 96.99 498 75.98 0.0 Ammonium transporter 1 member 3 OS Arabidopsis thaliana GN AMT1-3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LK16|AMT15_ARATH 7 717 + 711 Gaps:3 94.56 496 76.97 0.0 Putative ammonium transporter 1 member 5 OS Arabidopsis thaliana GN AMT1-5 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SVT8|AMT14_ARATH 3 717 + 715 Gaps:10 95.44 504 77.55 0.0 Ammonium transporter 1 member 4 OS Arabidopsis thaliana GN AMT1-4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZPJ8|AMT12_ARATH 1 736 + 736 Gaps:33 100.00 514 72.18 0.0 Ammonium transporter 1 member 2 OS Arabidopsis thaliana GN AMT1-2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6K9G1|AMT12_ORYSJ 10 734 + 725 Gaps:20 96.37 496 75.52 0.0 Ammonium transporter 1 member 2 OS Oryza sativa subsp. japonica GN AMT1-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XQ12|AMT11_ORYSJ 7 717 + 711 Gaps:21 92.77 498 76.62 0.0 Ammonium transporter 1 member 1 OS Oryza sativa subsp. japonica GN AMT1-1 PE 2 SV 1
blastp_uniprot_sprot sp|Q6K9G3|AMT13_ORYSJ 12 735 + 724 Gaps:24 96.99 498 73.91 0.0 Ammonium transporter 1 member 3 OS Oryza sativa subsp. japonica GN AMT1-3 PE 2 SV 1

37 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 419 444 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 114 132 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 6 482 477 PTHR11730:SF6 none none none
Pfam 496 713 218 PF00909 none Ammonium Transporter Family IPR024041
Pfam 50 471 422 PF00909 none Ammonium Transporter Family IPR024041
Phobius 243 261 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 661 686 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 392 418 27 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 362 372 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 200 222 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 160 180 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 445 582 138 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 181 199 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Gene3D 45 452 408 G3DSA:1.10.3430.10 none none IPR029020
Phobius 14 25 12 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 1 1 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
SUPERFAMILY 45 452 408 SSF111352 none none IPR024041
Phobius 373 391 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 262 340 79 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 26 48 23 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 154 159 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 341 361 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
TIGRFAM 47 471 425 TIGR00836 none amt: ammonium transporter IPR001905
Phobius 223 242 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 133 153 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 49 73 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 94 113 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSitePatterns 201 226 26 PS01219 none Ammonium transporters signature. IPR018047
Phobius 1 25 25 SIGNAL_PEPTIDE none Signal peptide region none
SUPERFAMILY 496 694 199 SSF111352 none none IPR024041

13 Localization

Analysis Start End Length
TMHMM 422 444 22
TMHMM 664 686 22
TMHMM 579 598 19
TMHMM 157 179 22
TMHMM 493 512 19
TMHMM 242 261 19
TMHMM 324 355 31
TMHMM 199 221 22
TMHMM 527 549 22
TMHMM 133 152 19
TMHMM 289 311 22
TMHMM 94 113 19
TMHMM 51 73 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting