Protein : Qrob_P0189640.2 Q. robur
Protein Identifier  ? Qrob_P0189640.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=3) K02872 - large subunit ribosomal protein L13Ae Gene Prediction Quality  validated
Protein length 

Sequence

Length: 207  
Kegg Orthology  K02872
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015934 large ribosomal subunit The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103324235 1 206 + 206 none 100.00 206 95.63 4e-142 60S ribosomal protein L13a-4
blastp_kegg lcl|pxb:103963505 1 206 + 206 none 100.00 206 96.12 7e-142 60S ribosomal protein L13a-4
blastp_kegg lcl|pxb:103940058 1 206 + 206 none 100.00 206 96.12 8e-142 60S ribosomal protein L13a-4-like
blastp_kegg lcl|mdm:103420727 1 206 + 206 none 100.00 206 96.12 8e-142 60S ribosomal protein L13a-4
blastp_kegg lcl|cmo:103497862 1 206 + 206 none 100.00 206 95.15 1e-141 60S ribosomal protein L13a-4
blastp_kegg lcl|cmo:103496971 1 206 + 206 none 100.00 206 95.15 1e-141 60S ribosomal protein L13a-4
blastp_kegg lcl|cmo:103492022 1 206 + 206 none 100.00 206 95.15 1e-141 60S ribosomal protein L13a-4
blastp_kegg lcl|csv:101214548 1 206 + 206 none 100.00 206 95.15 1e-141 60S ribosomal protein L13a-4-like
blastp_kegg lcl|csv:101213988 1 206 + 206 none 100.00 206 95.15 1e-141 60S ribosomal protein L13a-4-like
blastp_kegg lcl|cmo:103483483 1 206 + 206 none 100.00 206 94.66 2e-141 60S ribosomal protein L13a-2-like
blastp_pdb 3izr_K 1 206 + 206 none 100.00 206 84.95 7e-131 mol:protein length:206 60S ribosomal protein L13a (L13p)
blastp_pdb 2zkr_j 12 201 + 190 none 93.60 203 58.42 2e-77 mol:protein length:203 60S ribosomal protein L13a
blastp_pdb 3u5i_O 12 192 + 181 none 90.95 199 53.59 1e-66 mol:protein length:199 60S ribosomal protein L16-A 60S ribosomal pr
blastp_pdb 3u5e_O 12 192 + 181 none 90.95 199 53.59 1e-66 mol:protein length:199 60S ribosomal protein L16-A 60S ribosomal pr
blastp_pdb 3o5h_P 12 192 + 181 none 90.95 199 53.59 1e-66 mol:protein length:199 60S ribosomal protein L16-A
blastp_pdb 3o58_P 12 192 + 181 none 90.95 199 53.59 1e-66 mol:protein length:199 60S ribosomal protein L16-A
blastp_pdb 3izs_K 12 192 + 181 none 90.95 199 53.59 1e-66 mol:protein length:199 60S ribosomal protein rpL16 (L13p)
blastp_pdb 4a1e_I 10 201 + 192 Gaps:6 93.94 198 51.61 8e-61 mol:protein length:198 60S RIBOSOMAL PROTEIN L13A
blastp_pdb 4a1c_I 10 201 + 192 Gaps:6 93.94 198 51.61 8e-61 mol:protein length:198 60S RIBOSOMAL PROTEIN L13A
blastp_pdb 4a1a_I 10 201 + 192 Gaps:6 93.94 198 51.61 8e-61 mol:protein length:198 60S RIBOSOMAL PROTEIN L13A
blastp_uniprot_sprot sp|Q9FKC0|R13A4_ARATH 1 206 + 206 none 100.00 206 88.35 2e-135 60S ribosomal protein L13a-4 OS Arabidopsis thaliana GN RPL13AD PE 2 SV 1
blastp_uniprot_sprot sp|Q9SFU1|R13A1_ARATH 1 206 + 206 none 100.00 206 85.92 4e-134 60S ribosomal protein L13a-1 OS Arabidopsis thaliana GN RPL13AA PE 2 SV 1
blastp_uniprot_sprot sp|Q9LRX8|R13A2_ARATH 1 206 + 206 none 100.00 206 87.86 4e-134 60S ribosomal protein L13a-2 OS Arabidopsis thaliana GN RPL13AB PE 1 SV 1
blastp_uniprot_sprot sp|Q9SVR0|R13A3_ARATH 1 206 + 206 none 100.00 206 87.38 6e-134 60S ribosomal protein L13a-3 OS Arabidopsis thaliana GN RPL13AC PE 2 SV 1
blastp_uniprot_sprot sp|O49885|RL13A_LUPLU 1 206 + 206 Gaps:1 100.00 205 83.41 5e-125 60S ribosomal protein L13a OS Lupinus luteus GN RPL13A PE 2 SV 1
blastp_uniprot_sprot sp|O65055|RL13A_PICMA 1 206 + 206 none 100.00 206 79.61 4e-122 60S ribosomal protein L13a OS Picea mariana GN RPL13A PE 2 SV 1
blastp_uniprot_sprot sp|P93099|RL13A_CYAPA 10 183 + 174 none 87.00 200 65.52 5e-80 60S ribosomal protein L13a OS Cyanophora paradoxa PE 2 SV 1
blastp_uniprot_sprot sp|Q3SZ90|RL13A_BOVIN 12 201 + 190 none 93.60 203 60.00 4e-79 60S ribosomal protein L13a OS Bos taurus GN RPL13A PE 2 SV 3
blastp_uniprot_sprot sp|Q5RA38|RL13A_PONAB 12 201 + 190 none 93.60 203 59.47 1e-78 60S ribosomal protein L13a OS Pongo abelii GN RPL13A PE 2 SV 3
blastp_uniprot_sprot sp|P40429|RL13A_HUMAN 12 201 + 190 none 93.60 203 59.47 1e-78 60S ribosomal protein L13a OS Homo sapiens GN RPL13A PE 1 SV 2

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 12 125 114 PF00572 none Ribosomal protein L13 IPR005822
PANTHER 1 206 206 PTHR11545 none none IPR005822
Gene3D 12 153 142 G3DSA:3.90.1180.10 none none IPR023564
TIGRFAM 12 153 142 TIGR01077 none L13_A_E: ribosomal protein uL13 IPR005755
PANTHER 1 206 206 PTHR11545:SF3 none none IPR005755
SUPERFAMILY 12 154 143 SSF52161 none none IPR023564

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 107   Mitochondrion 5 0.041 0.580 NON-PLANT 107