Protein : Qrob_P0189540.2 Q. robur
Protein Identifier  ? Qrob_P0189540.2 Organism . Name  Quercus robur
Score  95.0 Score Type  egn
Protein Description  (M=1) K02327 - DNA polymerase delta subunit 1 [EC:2.7.7.7] Code Enzyme  EC:2.7.7.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 626  
Kegg Orthology  K02327
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0003887 DNA-directed DNA polymerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100246530 21 625 + 605 Gaps:16 54.09 1089 93.38 0.0 DNA polymerase delta catalytic subunit-like
blastp_kegg lcl|pmum:103326936 21 625 + 605 Gaps:16 54.24 1086 93.38 0.0 DNA polymerase delta catalytic subunit
blastp_kegg lcl|tcc:TCM_030969 21 625 + 605 Gaps:16 53.69 1097 93.55 0.0 DNA binding nucleotide bindin isoform 1
blastp_kegg lcl|mdm:103428006 21 625 + 605 Gaps:16 54.24 1086 92.19 0.0 DNA polymerase delta catalytic subunit-like
blastp_kegg lcl|pxb:103936047 21 625 + 605 Gaps:16 54.24 1086 92.19 0.0 DNA polymerase delta catalytic subunit-like
blastp_kegg lcl|pxb:103957642 21 625 + 605 Gaps:16 54.24 1086 92.02 0.0 DNA polymerase delta catalytic subunit-like
blastp_kegg lcl|cam:101492775 21 625 + 605 Gaps:16 54.19 1087 91.17 0.0 DNA polymerase delta catalytic subunit-like
blastp_kegg lcl|cmo:103500947 21 625 + 605 Gaps:16 54.24 1086 91.51 0.0 DNA polymerase delta catalytic subunit
blastp_kegg lcl|cic:CICLE_v10000086mg 21 625 + 605 Gaps:18 56.77 1034 92.33 0.0 hypothetical protein
blastp_kegg lcl|cit:102612202 21 625 + 605 Gaps:18 53.80 1091 92.33 0.0 DNA polymerase delta catalytic subunit-like
blastp_pdb 3iay_A 23 483 + 461 Gaps:8 49.51 919 58.24 4e-177 mol:protein length:919 DNA polymerase delta catalytic subunit
blastp_pdb 2gv9_B 21 440 + 420 Gaps:97 42.16 1193 28.43 5e-48 mol:protein length:1193 DNA polymerase
blastp_pdb 2gv9_A 21 440 + 420 Gaps:97 42.16 1193 28.43 5e-48 mol:protein length:1193 DNA polymerase
blastp_pdb 2vwk_A 50 503 + 454 Gaps:50 56.92 773 32.50 3e-46 mol:protein length:773 DNA POLYMERASE
blastp_pdb 2vwj_A 50 503 + 454 Gaps:50 56.92 773 32.50 3e-46 mol:protein length:773 DNA POLYMERASE
blastp_pdb 1tgo_A 50 503 + 454 Gaps:50 56.92 773 32.50 3e-46 mol:protein length:773 PROTEIN (THERMOSTABLE B DNA POLYMERASE)
blastp_pdb 2xhb_A 50 503 + 454 Gaps:50 56.92 773 32.50 3e-46 mol:protein length:773 DNA POLYMERASE
blastp_pdb 1qht_A 50 480 + 431 Gaps:48 54.06 775 33.41 1e-45 mol:protein length:775 PROTEIN (DNA POLYMERASE)
blastp_pdb 1wn7_A 49 502 + 454 Gaps:50 56.85 774 32.95 2e-43 mol:protein length:774 Family B DNA Polymerase
blastp_pdb 1wns_A 49 502 + 454 Gaps:50 56.85 774 32.95 3e-43 mol:protein length:774 DNA POLYMERASE
blastp_uniprot_sprot sp|Q9LRE6|DPOD1_ORYSJ 21 625 + 605 Gaps:16 53.30 1105 89.13 0.0 DNA polymerase delta catalytic subunit OS Oryza sativa subsp. japonica GN POLD1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LVN7|DPOD1_ARATH 21 625 + 605 Gaps:18 53.61 1095 87.73 0.0 DNA polymerase delta catalytic subunit OS Arabidopsis thaliana GN POLD1 PE 2 SV 2
blastp_uniprot_sprot sp|O48901|DPOD1_SOYBN 21 546 + 526 Gaps:2 48.16 1088 88.93 0.0 DNA polymerase delta catalytic subunit OS Glycine max GN POLD1 PE 2 SV 1
blastp_uniprot_sprot sp|P30316|DPOD_SCHPO 21 623 + 603 Gaps:20 53.87 1086 63.08 0.0 DNA polymerase delta catalytic subunit OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN pol3 PE 1 SV 2
blastp_uniprot_sprot sp|P46588|DPOD_CANAX 21 623 + 603 Gaps:24 56.55 1038 62.52 0.0 DNA polymerase delta catalytic subunit OS Candida albicans GN POL3 PE 3 SV 2
blastp_uniprot_sprot sp|P52431|DPOD1_MOUSE 21 624 + 604 Gaps:22 53.21 1105 61.22 0.0 DNA polymerase delta catalytic subunit OS Mus musculus GN Pold1 PE 1 SV 2
blastp_uniprot_sprot sp|O54747|DPOD1_RAT 21 624 + 604 Gaps:22 53.31 1103 60.88 0.0 DNA polymerase delta catalytic subunit OS Rattus norvegicus GN Pold1 PE 2 SV 1
blastp_uniprot_sprot sp|P28340|DPOD1_HUMAN 21 624 + 604 Gaps:22 53.12 1107 60.88 0.0 DNA polymerase delta catalytic subunit OS Homo sapiens GN POLD1 PE 1 SV 2
blastp_uniprot_sprot sp|P97283|DPOD1_MESAU 21 624 + 604 Gaps:22 53.31 1103 60.88 0.0 DNA polymerase delta catalytic subunit OS Mesocricetus auratus GN POLD1 PE 2 SV 1
blastp_uniprot_sprot sp|P28339|DPOD1_BOVIN 21 624 + 604 Gaps:22 53.16 1106 60.71 0.0 DNA polymerase delta catalytic subunit OS Bos taurus GN POLD1 PE 1 SV 1

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 2 275 274 SM00486 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA polymerase type-B family IPR006172
SUPERFAMILY 74 485 412 SSF56672 none none none
Gene3D 223 338 116 G3DSA:3.90.1600.10 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" none IPR023211
Gene3D 90 124 35 G3DSA:3.90.1600.10 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" none IPR023211
Pfam 519 607 89 PF14260 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" C4-type zinc-finger of DNA polymerase delta IPR025687
PANTHER 23 551 529 PTHR10322 none none none
PANTHER 568 625 58 PTHR10322 none none none
PRINTS 108 121 14 PR00106 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA-directed DNA-polymerase family B signature IPR006172
PRINTS 261 269 9 PR00106 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA-directed DNA-polymerase family B signature IPR006172
PRINTS 200 212 13 PR00106 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA-directed DNA-polymerase family B signature IPR006172
ProSitePatterns 263 271 9 PS00116 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA polymerase family B signature. IPR017964
Gene3D 16 57 42 G3DSA:3.30.420.10 none none IPR012337
Gene3D 164 215 52 G3DSA:1.10.287.690 none none none
TIGRFAM 85 480 396 TIGR00592 none pol2: DNA polymerase (pol2) none
Pfam 58 487 430 PF00136 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA polymerase family B IPR006134
PANTHER 23 551 529 PTHR10322:SF11 none none none
PANTHER 568 625 58 PTHR10322:SF11 none none none
SUPERFAMILY 12 79 68 SSF53098 none none IPR012337

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 24   Secretory pathway 1 0.976 0.024 NON-PLANT 24