Protein : Qrob_P0188010.2 Q. robur
Protein Identifier  ? Qrob_P0188010.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) KOG1687//KOG4662 - NADH-ubiquinone oxidoreductase NUFS7/PSST/20 kDa subunit [Energy production and conversion]. // NADH dehydrogenase subunit 3 and related proteins [Energy production and conversion]. Code Enzyme  EC:1.6.99.3, EC:1.6.5.3
Gene Prediction Quality  validated Protein length 

Sequence

Length: 347  
Kegg Orthology  K05582
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0016651 oxidoreductase activity, acting on NAD(P)H Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO:0048038 quinone binding Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
GO:0051539 4 iron, 4 sulfur cluster binding Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
GO:0051536 iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
GO:0008137 NADH dehydrogenase (ubiquinone) activity Catalysis of the reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mtr:MTR_4g051250 24 343 + 320 Gaps:32 88.43 389 72.09 9e-166 NAD(P)H-quinone oxidoreductase subunit K
blastp_kegg lcl|mtr:MTR_7g021790 24 336 + 313 Gaps:32 88.92 379 72.40 1e-162 NAD(P)H-quinone oxidoreductase subunit K
blastp_kegg lcl|mtr:MTR_4g053850 93 336 + 244 Gaps:38 94.12 272 67.19 2e-106 NAD(P)H-quinone oxidoreductase subunit K
blastp_kegg lcl|vvi:4025142 159 346 + 188 Gaps:28 93.33 225 75.71 1e-103 ndhK ViviCp025 NADH dehydrogenase 27 kDa subunit
blastp_kegg lcl|pop:Poptr_cp026 147 346 + 200 Gaps:30 97.78 225 73.18 1e-102 ndhK NADH dehydrogenase subunit K (EC:1.6.5.3)
blastp_kegg lcl|fve:10251521 159 346 + 188 Gaps:28 92.92 226 75.24 2e-102 ndhK FvH4_C0043 NADH-plastoquinone oxidoreductase subunit K
blastp_kegg lcl|tcc:ThcaC_p024 159 346 + 188 Gaps:28 93.33 225 73.81 2e-99 ndhK NADH-plastoquinone oxidoreductase subunit K
blastp_kegg lcl|sot:4099978 147 346 + 200 Gaps:30 77.46 284 71.82 3e-99 ndhK SotuCp025 NADH dehydrogenase 27 kDa subunit
blastp_kegg lcl|sly:3950396 147 346 + 200 Gaps:30 77.46 284 71.82 3e-99 ndhK LyesC2p065 NADH-plastoquinone oxidoreductase subunit K
blastp_kegg lcl|sly:101260256 147 346 + 200 Gaps:30 77.46 284 71.82 3e-99 ndhK NAD(P)H-quinone oxidoreductase subunit K chloroplastic-like
blastp_pdb 3m9s_F 153 288 + 136 Gaps:3 74.59 181 43.70 4e-35 mol:protein length:181 NADH-quinone oxidoreductase subunit B
blastp_pdb 3m9s_6 153 288 + 136 Gaps:3 74.59 181 43.70 4e-35 mol:protein length:181 NADH-quinone oxidoreductase subunit B
blastp_pdb 3ias_X 153 288 + 136 Gaps:3 74.59 181 43.70 4e-35 mol:protein length:181 NADH-quinone oxidoreductase subunit 6
blastp_pdb 3ias_O 153 288 + 136 Gaps:3 74.59 181 43.70 4e-35 mol:protein length:181 NADH-quinone oxidoreductase subunit 6
blastp_pdb 3ias_F 153 288 + 136 Gaps:3 74.59 181 43.70 4e-35 mol:protein length:181 NADH-quinone oxidoreductase subunit 6
blastp_pdb 3ias_6 153 288 + 136 Gaps:3 74.59 181 43.70 4e-35 mol:protein length:181 NADH-quinone oxidoreductase subunit 6
blastp_pdb 3iam_F 153 288 + 136 Gaps:3 74.59 181 43.70 4e-35 mol:protein length:181 NADH-quinone oxidoreductase subunit 6
blastp_pdb 3iam_6 153 288 + 136 Gaps:3 74.59 181 43.70 4e-35 mol:protein length:181 NADH-quinone oxidoreductase subunit 6
blastp_pdb 3i9v_F 153 288 + 136 Gaps:3 74.59 181 43.70 4e-35 mol:protein length:181 NADH-quinone oxidoreductase subunit 6
blastp_pdb 3i9v_6 153 288 + 136 Gaps:3 74.59 181 43.70 4e-35 mol:protein length:181 NADH-quinone oxidoreductase subunit 6
blastp_uniprot_sprot sp|Q0ZJ16|NDHK_VITVI 159 346 + 188 Gaps:28 93.33 225 75.71 4e-105 NAD(P)H-quinone oxidoreductase subunit K chloroplastic OS Vitis vinifera GN ndhK PE 3 SV 2
blastp_uniprot_sprot sp|A4GYR4|NDHK_POPTR 147 346 + 200 Gaps:30 97.78 225 73.18 5e-104 NAD(P)H-quinone oxidoreductase subunit K chloroplastic OS Populus trichocarpa GN ndhK PE 3 SV 2
blastp_uniprot_sprot sp|Q09G42|NDHK_PLAOC 159 346 + 188 Gaps:28 93.33 225 75.71 6e-104 NAD(P)H-quinone oxidoreductase subunit K chloroplastic OS Platanus occidentalis GN ndhK PE 3 SV 2
blastp_uniprot_sprot sp|Q0G9L5|NDHK_LIRTU 159 346 + 188 Gaps:28 93.33 225 75.71 1e-103 NAD(P)H-quinone oxidoreductase subunit K chloroplastic OS Liriodendron tulipifera GN ndhK PE 3 SV 2
blastp_uniprot_sprot sp|Q68S02|NDHK_PANGI 159 346 + 188 Gaps:28 93.33 225 74.76 4e-103 NAD(P)H-quinone oxidoreductase subunit K chloroplastic OS Panax ginseng GN ndhK PE 3 SV 1
blastp_uniprot_sprot sp|A8SEA7|NDHK_CERDE 157 346 + 190 Gaps:27 94.30 228 73.49 4e-103 NAD(P)H-quinone oxidoreductase subunit K chloroplastic OS Ceratophyllum demersum GN ndhK PE 3 SV 2
blastp_uniprot_sprot sp|Q14FF3|NDHK_POPAL 147 346 + 200 Gaps:30 97.78 225 72.73 5e-103 NAD(P)H-quinone oxidoreductase subunit K chloroplastic OS Populus alba GN ndhK PE 3 SV 1
blastp_uniprot_sprot sp|A6MMU8|NDHK_ILLOL 159 346 + 188 Gaps:28 93.33 225 74.29 1e-102 NAD(P)H-quinone oxidoreductase subunit K chloroplastic OS Illicium oligandrum GN ndhK PE 3 SV 2
blastp_uniprot_sprot sp|Q49KZ4|NDHK_EUCGG 159 346 + 188 Gaps:28 93.33 225 74.29 3e-102 NAD(P)H-quinone oxidoreductase subunit K chloroplastic OS Eucalyptus globulus subsp. globulus GN ndhK PE 3 SV 2
blastp_uniprot_sprot sp|Q8S8X1|NDHK_ATRBE 159 346 + 188 Gaps:28 93.33 225 73.81 3e-102 NAD(P)H-quinone oxidoreductase subunit K chloroplastic OS Atropa belladonna GN ndhK PE 3 SV 2

16 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
TIGRFAM 160 288 129 TIGR01957 none nuoB_fam: NADH-quinone oxidoreductase, B subunit IPR006138
Phobius 36 61 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 62 86 25 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 109 114 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 35 35 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSitePatterns 268 284 17 PS01150 none Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. IPR006138
PANTHER 115 330 216 PTHR11995:SF10 none none none
Hamap 30 147 118 MF_01394 none NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. IPR023043
Phobius 115 139 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 159 292 134 SSF56770 none none none
PANTHER 115 330 216 PTHR11995 none none none
Gene3D 170 288 119 G3DSA:3.40.50.700 none none IPR006137
Phobius 87 108 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 211 288 78 PF01058 none NADH ubiquinone oxidoreductase, 20 Kd subunit IPR006137
Phobius 140 346 207 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 51 145 95 PF00507 none NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 IPR000440

3 Localization

Analysis Start End Length
TMHMM 87 109 22
TMHMM 116 138 22
TMHMM 37 59 22

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting