Protein : Qrob_P0186260.2 Q. robur
Protein Identifier  ? Qrob_P0186260.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR11669:SF9 - REPLICATION FACTOR C SUBUNIT 5 (PTHR11669:SF9) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 358  
Kegg Orthology  K10756
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006260 DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.

48 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103441543 1 356 + 356 Gaps:9 99.73 366 86.03 0.0 replication factor C subunit 3-like
blastp_kegg lcl|rcu:RCOM_0563570 1 356 + 356 Gaps:7 99.72 360 87.74 0.0 replication factor C / DNA polymerase III gamma-tau subunit putative (EC:2.7.7.7)
blastp_kegg lcl|cit:102612743 3 356 + 354 Gaps:5 98.63 364 87.47 0.0 replication factor C subunit 3-like
blastp_kegg lcl|pop:POPTR_0002s08170g 1 357 + 357 Gaps:8 100.00 363 87.33 0.0 POPTRDRAFT_816262 replication factor C 36 kDA family protein
blastp_kegg lcl|cmo:103504076 1 356 + 356 Gaps:6 99.72 363 86.19 0.0 replication factor C subunit 5
blastp_kegg lcl|pmum:103319797 1 356 + 356 Gaps:11 99.73 368 86.65 0.0 replication factor C subunit 3
blastp_kegg lcl|pxb:103967511 1 347 + 347 Gaps:9 97.27 366 86.24 0.0 replication factor C subunit 3-like
blastp_kegg lcl|pxb:103967506 1 347 + 347 Gaps:9 97.27 366 86.24 0.0 replication factor C subunit 3-like
blastp_kegg lcl|vvi:100266082 1 346 + 346 Gaps:3 96.94 360 88.54 0.0 replication factor C subunit 5-like
blastp_kegg lcl|csv:101231530 1 356 + 356 Gaps:6 99.72 363 85.36 0.0 replication factor C subunit 5-like
blastp_pdb 1sxj_C 35 345 + 311 Gaps:15 93.53 340 47.48 2e-100 mol:protein length:340 Activator 1 40 kDa subunit
blastp_pdb 1iqp_F 35 346 + 312 Gaps:3 94.50 327 40.78 7e-83 mol:protein length:327 RFCS
blastp_pdb 1iqp_E 35 346 + 312 Gaps:3 94.50 327 40.78 7e-83 mol:protein length:327 RFCS
blastp_pdb 1iqp_D 35 346 + 312 Gaps:3 94.50 327 40.78 7e-83 mol:protein length:327 RFCS
blastp_pdb 1iqp_C 35 346 + 312 Gaps:3 94.50 327 40.78 7e-83 mol:protein length:327 RFCS
blastp_pdb 1iqp_B 35 346 + 312 Gaps:3 94.50 327 40.78 7e-83 mol:protein length:327 RFCS
blastp_pdb 1iqp_A 35 346 + 312 Gaps:3 94.50 327 40.78 7e-83 mol:protein length:327 RFCS
blastp_pdb 2chv_F 36 346 + 311 Gaps:3 96.55 319 37.99 3e-77 mol:protein length:319 REPLICATION FACTOR C SMALL SUBUNIT
blastp_pdb 2chv_E 36 346 + 311 Gaps:3 96.55 319 37.99 3e-77 mol:protein length:319 REPLICATION FACTOR C SMALL SUBUNIT
blastp_pdb 2chv_D 36 346 + 311 Gaps:3 96.55 319 37.99 3e-77 mol:protein length:319 REPLICATION FACTOR C SMALL SUBUNIT
blastp_uniprot_sprot sp|Q6YZ54|RFC3_ORYSJ 28 357 + 330 Gaps:1 91.14 361 84.50 0.0 Replication factor C subunit 3 OS Oryza sativa subsp. japonica GN RFC3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CAQ8|RFC5_ARATH 1 356 + 356 Gaps:14 99.73 369 78.53 0.0 Replication factor C subunit 5 OS Arabidopsis thaliana GN RFC5 PE 1 SV 1
blastp_uniprot_sprot sp|P40937|RFC5_HUMAN 35 356 + 322 Gaps:4 94.12 340 60.94 7e-141 Replication factor C subunit 5 OS Homo sapiens GN RFC5 PE 1 SV 1
blastp_uniprot_sprot sp|Q9D0F6|RFC5_MOUSE 28 356 + 329 Gaps:6 97.05 339 60.49 2e-140 Replication factor C subunit 5 OS Mus musculus GN Rfc5 PE 2 SV 1
blastp_uniprot_sprot sp|Q54ST4|RFC5_DICDI 20 349 + 330 Gaps:3 95.39 347 55.29 4e-126 Probable replication factor C subunit 5 OS Dictyostelium discoideum GN rfc5 PE 3 SV 1
blastp_uniprot_sprot sp|O14003|RFC3_SCHPO 17 344 + 328 Gaps:6 95.32 342 50.31 4e-115 Replication factor C subunit 3 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rfc3 PE 1 SV 2
blastp_uniprot_sprot sp|O74111|RFC3_BLAAD 20 343 + 324 Gaps:9 96.15 338 49.23 6e-106 Replication factor C subunit 3 OS Blastobotrys adeninivorans GN RFC3 PE 3 SV 1
blastp_uniprot_sprot sp|P38629|RFC3_YEAST 35 345 + 311 Gaps:15 93.53 340 47.80 2e-100 Replication factor C subunit 3 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RFC3 PE 1 SV 1
blastp_uniprot_sprot sp|P34429|RFC5_CAEEL 35 338 + 304 Gaps:7 84.51 368 47.59 1e-98 Probable replication factor C subunit 5 OS Caenorhabditis elegans GN F44B9.8 PE 3 SV 3
blastp_uniprot_sprot sp|Q9HN27|RFCS_HALSA 36 344 + 309 Gaps:4 94.72 322 42.95 1e-82 Replication factor C small subunit OS Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN rfcS PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 34 251 218 SSF52540 none none IPR027417
SMART 66 196 131 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Gene3D 258 353 96 G3DSA:1.20.272.10 none none none
Gene3D 198 257 60 G3DSA:1.10.8.60 none none none
PANTHER 6 357 352 PTHR11669:SF9 none none none
Pfam 257 345 89 PF08542 "Reactome:REACT_152","Reactome:REACT_1538","Reactome:REACT_216","Reactome:REACT_22172","Reactome:REACT_383" Replication factor C C-terminal domain IPR013748
SUPERFAMILY 258 348 91 SSF48019 "Reactome:REACT_152","Reactome:REACT_1538","Reactome:REACT_216","Reactome:REACT_22172","Reactome:REACT_383" none IPR008921
PANTHER 6 357 352 PTHR11669 none none none
Gene3D 35 193 159 G3DSA:3.40.50.300 none none IPR027417
Pfam 70 191 122 PF00004 none ATPase family associated with various cellular activities (AAA) IPR003959

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting