Protein : Qrob_P0185610.2 Q. robur
Protein Identifier  ? Qrob_P0185610.2 Organism . Name  Quercus robur
Score  6.1 Score Type  egn
Protein Description  (M=4) PTHR11206:SF78 - MATE EFFLUX FAMILY PROTEIN ALF5-RELATED (PTHR11206:SF78) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 607  
Kegg Orthology  K03327
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006855 drug transmembrane transport The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
GO:0015238 drug transmembrane transporter activity Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
GO:0015297 antiporter activity Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out).
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103947665 34 599 + 566 Gaps:1 80.08 482 71.24 0.0 MATE efflux family protein ALF5-like
blastp_kegg lcl|pxb:103947597 34 599 + 566 Gaps:1 80.08 482 70.73 0.0 MATE efflux family protein ALF5-like
blastp_kegg lcl|pop:POPTR_0131s00210g 34 606 + 573 none 81.03 485 72.01 0.0 aberrant lateral root formation 1 family protein
blastp_kegg lcl|pxb:103932868 34 599 + 566 Gaps:1 79.59 485 70.98 0.0 MATE efflux family protein ALF5-like
blastp_kegg lcl|pop:POPTR_0011s11810g 34 606 + 573 Gaps:1 81.03 485 71.25 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_046871 34 604 + 571 Gaps:23 74.48 576 66.67 0.0 MATE efflux family protein ALF5
blastp_kegg lcl|vvi:100241893 36 603 + 568 Gaps:3 85.22 487 68.43 0.0 MATE efflux family protein ALF5-like
blastp_kegg lcl|mdm:103448706 36 599 + 564 Gaps:13 79.83 476 71.32 0.0 MATE efflux family protein ALF5-like
blastp_kegg lcl|pper:PRUPE_ppa016427mg 36 606 + 571 Gaps:3 80.08 487 72.31 0.0 hypothetical protein
blastp_kegg lcl|mdm:103448705 34 602 + 569 Gaps:4 77.80 500 71.98 0.0 MATE efflux family protein LAL5-like
blastp_pdb 3mku_B 216 580 + 365 Gaps:21 81.30 460 26.20 1e-18 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mku_A 216 580 + 365 Gaps:21 81.30 460 26.20 1e-18 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_B 216 580 + 365 Gaps:21 81.30 460 26.20 1e-18 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_A 216 580 + 365 Gaps:21 81.30 460 26.20 1e-18 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_uniprot_sprot sp|Q9LUH3|LAL5_ARATH 34 593 + 560 none 81.02 469 61.84 2e-159 MATE efflux family protein LAL5 OS Arabidopsis thaliana GN LAL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LUH2|ALF5_ARATH 27 594 + 568 none 81.34 477 61.86 3e-159 MATE efflux family protein ALF5 OS Arabidopsis thaliana GN ALF5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA5|DTX1_ARATH 36 600 + 565 Gaps:6 82.56 476 37.40 1e-77 MATE efflux family protein DTX1 OS Arabidopsis thaliana GN DTX1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA3|MATE6_ARATH 36 591 + 556 Gaps:2 79.41 476 38.62 7e-76 MATE efflux family protein 6 OS Arabidopsis thaliana GN DTXL2 PE 3 SV 2
blastp_uniprot_sprot sp|Q8RWF5|MATE9_ARATH 36 591 + 556 none 78.26 483 37.30 5e-75 MATE efflux family protein 9 OS Arabidopsis thaliana GN DTXL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA4|MATE5_ARATH 36 600 + 565 Gaps:6 82.14 476 37.34 7e-75 MATE efflux family protein 5 OS Arabidopsis thaliana GN DTXL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LYT3|TT12_ARATH 36 604 + 569 Gaps:12 76.33 507 36.95 2e-73 Protein TRANSPARENT TESTA 12 OS Arabidopsis thaliana GN TT12 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA1|MATE8_ARATH 36 599 + 564 none 80.92 477 35.75 1e-71 MATE efflux family protein 8 OS Arabidopsis thaliana GN DTXL4 PE 3 SV 2
blastp_uniprot_sprot sp|Q8GXM8|MATE7_ARATH 36 601 + 566 Gaps:4 86.34 476 35.04 2e-71 MATE efflux family protein 7 OS Arabidopsis thaliana GN DTXL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9USK3|YJ2D_SCHPO 36 566 + 531 Gaps:12 64.94 539 34.00 4e-51 Uncharacterized transporter C4B3.13 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPCC4B3.13 PE 3 SV 1
rpsblast_cdd gnl|CDD|162043 34 510 + 477 Gaps:49 87.13 342 35.57 3e-38 TIGR00797 matE putative efflux protein MATE family. The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus a putative ethionine resistance protein of Saccharomyces cerevisiae and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
rpsblast_cdd gnl|CDD|30880 35 597 + 563 Gaps:52 84.62 455 29.87 1e-33 COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms].
rpsblast_cdd gnl|CDD|179333 214 582 + 369 Gaps:22 82.68 456 24.67 1e-31 PRK01766 PRK01766 multidrug efflux protein Reviewed.
rpsblast_cdd gnl|CDD|190033 35 553 + 519 Gaps:5 99.38 161 42.50 1e-17 pfam01554 MatE MatE. The MatE domain.
rpsblast_cdd gnl|CDD|166843 241 582 + 342 Gaps:25 75.65 464 23.93 2e-11 PRK00187 PRK00187 multidrug efflux protein NorA Provisional.
rpsblast_kog gnl|CDD|36561 35 599 + 565 Gaps:51 81.18 473 44.79 6e-87 KOG1347 KOG1347 KOG1347 Uncharacterized membrane protein predicted efflux pump [General function prediction only].

37 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 402 420 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 228 592 365 PTHR11206:SF78 none none none
PANTHER 34 47 14 PTHR11206:SF78 none none none
Phobius 57 79 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 308 330 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 260 278 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 489 507 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 117 127 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 530 535 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 336 360 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 445 464 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 128 150 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 465 488 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 99 116 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 228 592 365 PTHR11206 none none none
PANTHER 34 47 14 PTHR11206 none none none
Phobius 559 563 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
TIGRFAM 214 566 353 TIGR00797 "Reactome:REACT_15518","Reactome:REACT_20633" matE: MATE efflux family protein IPR002528
Phobius 279 296 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 586 606 21 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 214 328 115 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
Pfam 392 552 161 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
Pfam 34 148 115 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
Phobius 421 444 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 156 180 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 331 335 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 237 259 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 536 558 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 508 529 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 56 56 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

13 Localization

Analysis Start End Length
TMHMM 504 526 22
TMHMM 102 124 22
TMHMM 282 304 22
TMHMM 59 81 22
TMHMM 239 261 22
TMHMM 390 412 22
TMHMM 338 360 22
TMHMM 533 555 22
TMHMM 158 180 22
TMHMM 565 584 19
TMHMM 309 331 22
TMHMM 467 489 22
TMHMM 129 151 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting