4 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0003677 | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| GO:0005634 | nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
| GO:0000786 | nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. |
| GO:0006334 | nucleosome assembly | The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA. |
22 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|sot:102583906 | 1 | 206 | + | 206 | Gaps:12 | 98.55 | 207 | 68.63 | 1e-62 | histone H1-like |
| blastp_kegg | lcl|sly:544142 | 1 | 206 | + | 206 | Gaps:12 | 98.55 | 207 | 67.65 | 4e-62 | H1 histone-like protein |
| blastp_kegg | lcl|pop:POPTR_0005s11860g | 2 | 209 | + | 208 | Gaps:25 | 97.52 | 202 | 66.50 | 5e-56 | HISTONE H1-3 family protein |
| blastp_kegg | lcl|cmo:103485111 | 8 | 208 | + | 201 | Gaps:8 | 92.79 | 208 | 64.25 | 1e-55 | histone H1 |
| blastp_kegg | lcl|csv:101205007 | 8 | 208 | + | 201 | Gaps:9 | 92.75 | 207 | 64.58 | 4e-55 | histone H1-like |
| blastp_kegg | lcl|pxb:103930957 | 17 | 198 | + | 182 | Gaps:30 | 83.16 | 190 | 68.35 | 5e-50 | histone H1-like |
| blastp_kegg | lcl|mdm:103454083 | 1 | 209 | + | 209 | Gaps:39 | 100.00 | 190 | 60.00 | 8e-49 | histone H1-like |
| blastp_kegg | lcl|mdm:103420008 | 14 | 193 | + | 180 | Gaps:30 | 82.11 | 190 | 67.31 | 1e-47 | histone H1-like |
| blastp_kegg | lcl|mdm:103436134 | 14 | 193 | + | 180 | Gaps:30 | 82.11 | 190 | 67.31 | 1e-47 | histone H1-like |
| blastp_kegg | lcl|pda:103697573 | 3 | 199 | + | 197 | Gaps:12 | 94.66 | 206 | 54.87 | 3e-46 | histone H1-like |
| blastp_uniprot_sprot | sp|P40267|H1_SOLPN | 1 | 206 | + | 206 | Gaps:11 | 98.51 | 202 | 68.34 | 7e-62 | Histone H1 OS Solanum pennellii PE 2 SV 1 |
| blastp_uniprot_sprot | sp|P27806|H1_WHEAT | 45 | 122 | + | 78 | none | 32.77 | 238 | 53.85 | 1e-19 | Histone H1 OS Triticum aestivum PE 2 SV 2 |
| blastp_uniprot_sprot | sp|P23444|H1_MAIZE | 54 | 122 | + | 69 | none | 28.05 | 246 | 56.52 | 3e-18 | Histone H1 OS Zea mays PE 2 SV 2 |
| blastp_uniprot_sprot | sp|P26569|H12_ARATH | 45 | 121 | + | 77 | Gaps:1 | 27.84 | 273 | 51.32 | 1e-17 | Histone H1.2 OS Arabidopsis thaliana GN At2g30620 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|Q08864|H11_VOLCA | 54 | 151 | + | 98 | Gaps:2 | 37.55 | 261 | 46.94 | 1e-16 | Histone H1-I OS Volvox carteri GN H1-I PE 2 SV 3 |
| blastp_uniprot_sprot | sp|Q08865|H12_VOLCA | 38 | 126 | + | 89 | Gaps:1 | 37.34 | 241 | 48.89 | 2e-16 | Histone H1-II OS Volvox carteri GN H1-II PE 2 SV 3 |
| blastp_uniprot_sprot | sp|P08283|H1_PEA | 47 | 122 | + | 76 | Gaps:1 | 28.30 | 265 | 53.33 | 1e-14 | Histone H1 OS Pisum sativum PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q9M5W4|H1_EUPES | 43 | 120 | + | 78 | Gaps:2 | 33.19 | 229 | 52.63 | 4e-14 | Histone H1 OS Euphorbia esula PE 2 SV 1 |
| blastp_uniprot_sprot | sp|P37218|H1_SOLLC | 45 | 121 | + | 77 | Gaps:1 | 26.48 | 287 | 53.95 | 7e-14 | Histone H1 OS Solanum lycopersicum PE 3 SV 1 |
| blastp_uniprot_sprot | sp|P26568|H11_ARATH | 49 | 121 | + | 73 | Gaps:1 | 26.28 | 274 | 52.78 | 7e-13 | Histone H1.1 OS Arabidopsis thaliana GN At1g06760 PE 2 SV 1 |
| rpsblast_cdd | gnl|CDD|197772 | 51 | 117 | + | 67 | Gaps:1 | 100.00 | 66 | 51.52 | 4e-11 | smart00526 H15 Domain in histone families 1 and 5. |
| rpsblast_cdd | gnl|CDD|201291 | 54 | 123 | + | 70 | Gaps:6 | 98.70 | 77 | 42.11 | 8e-09 | pfam00538 Linker_histone linker histone H1 and H5 family. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures Histone H1 is replaced by histone H5 in some cell types. |
10 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | 48 | 128 | 81 | SSF46785 | none | none | none |
| Pfam | 54 | 123 | 70 | PF00538 | none | linker histone H1 and H5 family | IPR005818 |
| PRINTS | 182 | 199 | 18 | PR00624 | none | Histone H5 signature | IPR005819 |
| PRINTS | 67 | 84 | 18 | PR00624 | none | Histone H5 signature | IPR005819 |
| PRINTS | 149 | 163 | 15 | PR00624 | none | Histone H5 signature | IPR005819 |
| PRINTS | 40 | 61 | 22 | PR00624 | none | Histone H5 signature | IPR005819 |
| SMART | 51 | 118 | 68 | SM00526 | none | Domain in histone families 1 and 5 | IPR005818 |
| ProSiteProfiles | 53 | 123 | 71 | PS51504 | none | Linker histone H1/H5 globular (H15) domain profile. | IPR005818 |
| Gene3D | 49 | 129 | 81 | G3DSA:1.10.10.10 | none | none | IPR011991 |
| PANTHER | 7 | 209 | 203 | PTHR11467 | none | none | none |
