Protein : Qrob_P0178260.2 Q. robur
Protein Identifier  ? Qrob_P0178260.2 Organism . Name  Quercus robur
Score  4.0 Score Type  egn
Protein Description  (M=2) KOG0946//KOG1237//KOG1361//KOG2005 - ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking secretion and vesicular transport]. // H+/oligopeptide symporter [Amino acid transport and metabolism]. // Predicted hydrolase involved in interstrand cross-link repair [Replication recombination and repair]. // 26S proteasome regulatory complex subunit RPN1/PSMD2 [Posttranslational modification protein turnover chaperones]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1078  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

8 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0005215 transporter activity Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0030234 enzyme regulator activity Binds to and modulates the activity of an enzyme.
GO:0009236 cobalamin biosynthetic process The chemical reactions and pathways resulting in the formation of cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom.
GO:0016852 sirohydrochlorin cobaltochelatase activity Catalysis of the reaction: sirohydrochlorin + Co2+ = cobalt-sirohydrochlorin + 2 H+.
GO:0000502 proteasome complex A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.
GO:0042176 regulation of protein catabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10000624mg 533 925 + 393 Gaps:20 64.87 612 57.68 6e-126 hypothetical protein
blastp_kegg lcl|cit:102608159 533 925 + 393 Gaps:20 64.87 612 57.68 6e-126 5' exonuclease Apollo-like
blastp_kegg lcl|fve:101292544 533 844 + 312 Gaps:10 54.79 584 62.50 2e-125 protein artemis-like
blastp_kegg lcl|vvi:100254013 533 879 + 347 Gaps:10 64.67 552 56.58 2e-124 5' exonuclease Apollo-like
blastp_kegg lcl|tcc:TCM_001480 533 853 + 321 Gaps:12 55.29 595 61.09 2e-123 DNA repair metallo-beta-lactamase family protein putative isoform 1
blastp_kegg lcl|pop:POPTR_0007s04080g 533 857 + 325 Gaps:28 58.66 537 64.13 4e-123 POPTRDRAFT_870310 DNA cross-link repair family protein
blastp_kegg lcl|pxb:103963150 535 859 + 325 Gaps:18 62.82 546 59.18 3e-122 5' exonuclease Apollo
blastp_kegg lcl|rcu:RCOM_0627060 533 866 + 334 Gaps:13 62.43 543 62.24 6e-122 DNA cross-link repair protein pso2/snm1 putative
blastp_kegg lcl|mdm:103441428 535 874 + 340 Gaps:18 71.17 503 55.87 2e-117 protein artemis
blastp_kegg lcl|gmx:100807948 533 866 + 334 Gaps:13 62.75 553 55.91 2e-110 5' exonuclease Apollo-like
blastp_pdb 2w3c_A 179 235 + 57 none 9.88 577 49.12 8e-07 mol:protein length:577 GENERAL VESICULAR TRANSPORT FACTOR P115
blastp_pdb 3grl_A 179 235 + 57 none 8.76 651 49.12 9e-07 mol:protein length:651 General vesicular transport factor p115
blastp_pdb 3gq2_B 179 235 + 57 none 8.76 651 49.12 9e-07 mol:protein length:651 General vesicular transport factor p115
blastp_pdb 3gq2_A 179 235 + 57 none 8.76 651 49.12 9e-07 mol:protein length:651 General vesicular transport factor p115
blastp_uniprot_sprot sp|Q9SIV2|PSD2A_ARATH 326 530 + 205 Gaps:29 26.26 891 70.51 5e-96 26S proteasome non-ATPase regulatory subunit 2 homolog A OS Arabidopsis thaliana GN RPN1A PE 1 SV 2
blastp_uniprot_sprot sp|Q6XJG8|PSD2B_ARATH 338 530 + 193 Gaps:29 24.92 891 70.27 3e-90 26S proteasome non-ATPase regulatory subunit 2 homolog B OS Arabidopsis thaliana GN RPN1B PE 1 SV 1
blastp_uniprot_sprot sp|B0F9L4|GOGC6_ARATH 191 336 + 146 Gaps:13 17.40 914 72.33 9e-59 Golgin candidate 6 OS Arabidopsis thaliana GN GC6 PE 1 SV 2
blastp_uniprot_sprot sp|Q13200|PSMD2_HUMAN 338 530 + 193 Gaps:32 24.34 908 45.70 6e-49 26S proteasome non-ATPase regulatory subunit 2 OS Homo sapiens GN PSMD2 PE 1 SV 3
blastp_uniprot_sprot sp|Q5R9I6|PSMD2_PONAB 338 530 + 193 Gaps:32 24.34 908 45.25 1e-48 26S proteasome non-ATPase regulatory subunit 2 OS Pongo abelii GN PSMD2 PE 2 SV 1
blastp_uniprot_sprot sp|P56701|PSMD2_BOVIN 338 530 + 193 Gaps:32 24.34 908 45.25 3e-48 26S proteasome non-ATPase regulatory subunit 2 OS Bos taurus GN PSMD2 PE 1 SV 2
blastp_uniprot_sprot sp|Q4FZT9|PSMD2_RAT 338 530 + 193 Gaps:32 24.34 908 45.25 9e-48 26S proteasome non-ATPase regulatory subunit 2 OS Rattus norvegicus GN Psmd2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VDM4|PSMD2_MOUSE 338 530 + 193 Gaps:32 24.34 908 45.25 1e-47 26S proteasome non-ATPase regulatory subunit 2 OS Mus musculus GN Psmd2 PE 1 SV 1
blastp_uniprot_sprot sp|Q54BC6|PSMD2_DICDI 338 512 + 175 Gaps:17 21.28 893 48.95 1e-46 26S proteasome non-ATPase regulatory subunit 2 OS Dictyostelium discoideum GN psmD2 PE 1 SV 1
blastp_uniprot_sprot sp|P87048|RPN1_SCHPO 339 530 + 192 Gaps:29 24.80 891 44.80 2e-43 26S proteasome regulatory subunit rpn1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpn1 PE 1 SV 2
rpsblast_cdd gnl|CDD|34713 339 529 + 191 Gaps:30 25.09 881 39.82 4e-44 COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|178357 876 943 + 68 none 44.16 154 72.06 1e-34 PLN02757 PLN02757 sirohydrochlorine ferrochelatase.
rpsblast_cdd gnl|CDD|110864 876 943 + 68 none 64.15 106 47.06 3e-17 pfam01903 CbiX CbiX. The function of CbiX is uncertain however it is found in cobalamin biosynthesis operons and so may have a related function. Some CbiX proteins contain a striking histidine-rich region at their C-terminus which suggests that it might be involved in metal chelation.
rpsblast_cdd gnl|CDD|48643 876 937 + 62 none 61.39 101 45.16 3e-14 cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB) N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase responsible for the chelation of Co2+ into sirohydrochlorin an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred..
rpsblast_cdd gnl|CDD|144446 990 1067 + 78 Gaps:18 24.73 372 25.00 6e-12 pfam00854 PTR2 POT family. The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters.
rpsblast_cdd gnl|CDD|203664 616 724 + 109 Gaps:8 94.39 107 21.78 3e-10 pfam07522 DRMBL DNA repair metallo-beta-lactamase. The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in pfam00753 and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair.

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 872 943 72 PF01903 "KEGG:00860+4.99.1.3","MetaCyc:PWY-7377","UniPathway:UPA00148" CbiX IPR002762
PANTHER 338 530 193 PTHR10943:SF1 none none IPR016643
Phobius 8 15 8 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 7 7 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 338 530 193 PTHR10943 none none none
Pfam 990 1074 85 PF00854 "Reactome:REACT_15518","Reactome:REACT_19419" POT family IPR000109
Phobius 16 20 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 21 1077 1057 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 872 943 72 SSF53800 none none none
Pfam 616 723 108 PF07522 none DNA repair metallo-beta-lactamase IPR011084
Phobius 1 20 20 SIGNAL_PEPTIDE none Signal peptide region none
Gene3D 873 943 71 G3DSA:3.40.50.1400 none none none

1 Localization

Analysis Start End Length
TMHMM 1031 1053 22

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 20   Secretory pathway 4 0.531 0.134 NON-PLANT 20