Protein : Qrob_P0176930.2 Q. robur
Protein Identifier  ? Qrob_P0176930.2 Organism . Name  Quercus robur
Score  1.0 Score Type  egn
Protein Description  (M=2) PF04801 - Sin-like protein conserved region Gene Prediction Quality  validated
Protein length 

Sequence

Length: 230  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa002228mg 1 176 + 176 Gaps:54 26.65 698 47.31 1e-34 hypothetical protein
blastp_kegg lcl|pmum:103340266 1 176 + 176 Gaps:54 26.72 696 47.31 2e-28 DNA-directed RNA polymerase III subunit RPC5
blastp_kegg lcl|pxb:103947489 1 176 + 176 Gaps:56 25.61 695 45.51 8e-28 DNA-directed RNA polymerase III subunit RPC5
blastp_kegg lcl|tcc:TCM_000428 1 176 + 176 Gaps:43 28.14 700 45.69 6e-27 SIN-like family protein putative isoform 1
blastp_kegg lcl|vvi:100247859 1 176 + 176 Gaps:51 26.64 672 48.60 3e-24 DNA-directed RNA polymerase III subunit RPC5-like
blastp_kegg lcl|csv:101231699 1 176 + 176 Gaps:44 27.92 702 41.33 1e-23 DNA-directed RNA polymerase III subunit RPC5-like
blastp_kegg lcl|csv:101212587 1 176 + 176 Gaps:44 27.92 702 41.33 1e-23 DNA-directed RNA polymerase III subunit RPC5-like
blastp_kegg lcl|cmo:103494365 1 176 + 176 Gaps:44 27.92 702 40.31 1e-22 DNA-directed RNA polymerase III subunit RPC5
blastp_kegg lcl|mdm:103402342 9 176 + 168 Gaps:56 52.15 326 46.47 5e-22 DNA-directed RNA polymerase III subunit RPC5-like
blastp_kegg lcl|rcu:RCOM_0553410 3 176 + 174 Gaps:41 27.92 677 41.80 1e-20 DNA-directed RNA polymerase putative
blastp_uniprot_sprot sp|Q0ZIV6|YCF2_VITVI 182 227 + 46 none 2.00 2300 86.96 1e-18 Protein Ycf2 OS Vitis vinifera GN ycf2-A PE 3 SV 1
blastp_uniprot_sprot sp|A0A379|YCF2_COFAR 183 227 + 45 none 1.97 2281 88.89 2e-18 Protein Ycf2 OS Coffea arabica GN ycf2-A PE 3 SV 1
blastp_uniprot_sprot sp|Q49KT6|YCF2_EUCGG 182 227 + 46 none 2.02 2280 86.96 2e-18 Protein Ycf2 OS Eucalyptus globulus subsp. globulus GN ycf2-A PE 3 SV 1
blastp_uniprot_sprot sp|A0ZZ78|YCF2_GOSBA 182 227 + 46 none 2.00 2298 84.78 1e-17 Protein Ycf2 OS Gossypium barbadense GN ycf2-A PE 3 SV 1
blastp_uniprot_sprot sp|Q2L949|YCF2_GOSHI 182 227 + 46 none 2.00 2298 84.78 1e-17 Protein Ycf2 OS Gossypium hirsutum GN ycf2-A PE 3 SV 1
blastp_uniprot_sprot sp|Q8S8U1|YCF2B_ATRBE 182 227 + 46 none 2.01 2291 84.78 1e-17 Protein Ycf2 B OS Atropa belladonna GN ycf2-B PE 3 SV 1
blastp_uniprot_sprot sp|Q8S8V2|YCF2A_ATRBE 182 227 + 46 none 2.01 2291 84.78 1e-17 Protein Ycf2 A OS Atropa belladonna GN ycf2-A PE 3 SV 1
blastp_uniprot_sprot sp|Q14F97|YCF2_POPAL 183 227 + 45 none 1.97 2282 86.67 1e-17 Protein Ycf2 OS Populus alba GN ycf2-A PE 3 SV 1
blastp_uniprot_sprot sp|Q33BV3|YCF2_NICTO 182 227 + 46 none 2.02 2280 84.78 1e-17 Protein Ycf2 OS Nicotiana tomentosiformis GN ycf2-A PE 3 SV 1
blastp_uniprot_sprot sp|A4GYV4|YCF2_POPTR 183 227 + 45 none 1.97 2285 86.67 1e-17 Protein Ycf2 OS Populus trichocarpa GN ycf2-1 PE 3 SV 1
rpsblast_cdd gnl|CDD|177097 127 227 + 101 Gaps:20 3.55 2281 56.79 7e-17 CHL00206 ycf2 Ycf2 Provisional.
rpsblast_cdd gnl|CDD|191097 120 169 + 50 Gaps:20 16.59 422 31.43 2e-07 pfam04801 Sin_N Sin-like protein conserved region. Family of higher eukaryotic proteins. SIN was identified as a protein that interacts specifically with SXL (sex lethal) in a yeast two-hybrid assay. The interaction is mediated by one of the SXL RNA binding domains.

1 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 137 174 38 PF04801 none Sin-like protein conserved region IPR006886

0 Localization

15 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting