Protein : Qrob_P0176920.2 Q. robur
Protein Identifier  ? Qrob_P0176920.2 Organism . Name  Quercus robur
Score  11.0 Score Type  egn
Protein Description  (M=1) PTHR12069 - DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE (RNA POLYMERASE III SUBUNIT 5) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 232  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0553410 21 222 + 202 Gaps:6 29.84 677 44.55 1e-38 DNA-directed RNA polymerase putative
blastp_kegg lcl|tcc:TCM_000428 16 222 + 207 Gaps:11 29.14 700 43.63 2e-35 SIN-like family protein putative isoform 1
blastp_kegg lcl|vvi:100247859 15 222 + 208 Gaps:11 31.40 672 41.71 3e-33 DNA-directed RNA polymerase III subunit RPC5-like
blastp_kegg lcl|cmo:103494365 16 222 + 207 Gaps:5 29.34 702 37.86 5e-33 DNA-directed RNA polymerase III subunit RPC5
blastp_kegg lcl|csv:101212587 16 222 + 207 Gaps:5 29.34 702 37.86 1e-32 DNA-directed RNA polymerase III subunit RPC5-like
blastp_kegg lcl|csv:101231699 16 222 + 207 Gaps:5 29.34 702 37.86 1e-32 DNA-directed RNA polymerase III subunit RPC5-like
blastp_kegg lcl|brp:103874616 21 222 + 202 Gaps:22 30.06 692 42.31 7e-32 DNA-directed RNA polymerase III subunit RPC5
blastp_kegg lcl|pmum:103340266 22 222 + 201 Gaps:19 29.60 696 40.29 1e-29 DNA-directed RNA polymerase III subunit RPC5
blastp_kegg lcl|pvu:PHAVU_002G0404001 23 222 + 200 Gaps:9 60.70 341 36.23 2e-29 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa002228mg 22 222 + 201 Gaps:19 29.51 698 40.29 4e-29 hypothetical protein
rpsblast_cdd gnl|CDD|191097 23 151 + 129 Gaps:9 31.75 422 27.61 1e-14 pfam04801 Sin_N Sin-like protein conserved region. Family of higher eukaryotic proteins. SIN was identified as a protein that interacts specifically with SXL (sex lethal) in a yeast two-hybrid assay. The interaction is mediated by one of the SXL RNA binding domains.
rpsblast_kog gnl|CDD|37565 21 162 + 142 Gaps:12 32.29 446 27.08 3e-13 KOG2354 KOG2354 KOG2354 RNA Polymerase C (III) 37 kDa subunit [Transcription].

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 30 156 127 PTHR12069 none none none
Pfam 24 152 129 PF04801 none Sin-like protein conserved region IPR006886

0 Localization

15 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting