Protein : Qrob_P0172110.2 Q. robur
Protein Identifier  ? Qrob_P0172110.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=9) PTHR11206:SF102 - MATE EFFLUX FAMILY PROTEIN (PTHR11206:SF102) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 407  
Kegg Orthology  K03327
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006855 drug transmembrane transport The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
GO:0015238 drug transmembrane transporter activity Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
GO:0015297 antiporter activity Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out).
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0013s06650g 3 397 + 395 none 80.78 489 73.16 0.0 POPTRDRAFT_571315 MATE efflux family protein
blastp_kegg lcl|tcc:TCM_025768 3 404 + 402 none 82.21 489 70.90 0.0 MATE efflux family protein
blastp_kegg lcl|rcu:RCOM_0845260 3 405 + 403 Gaps:3 81.97 488 71.50 0.0 multidrug resistance pump putative
blastp_kegg lcl|gmx:100789487 3 404 + 402 none 82.04 490 70.65 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|vvi:100244992 3 404 + 402 none 81.21 495 71.89 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|pvu:PHAVU_001G103200g 3 404 + 402 none 82.04 490 66.42 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa020699mg 3 399 + 397 Gaps:1 80.73 493 71.11 0.0 hypothetical protein
blastp_kegg lcl|gmx:100792122 3 406 + 404 Gaps:2 82.19 494 69.21 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|gmx:100797962 5 404 + 400 none 100.00 400 69.50 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|gmx:100796360 3 399 + 397 Gaps:1 80.24 496 69.85 0.0 protein TRANSPARENT TESTA 12-like
blastp_pdb 3mku_B 3 359 + 357 Gaps:26 79.78 460 23.43 7e-15 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mku_A 3 359 + 357 Gaps:26 79.78 460 23.43 7e-15 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_B 3 359 + 357 Gaps:26 79.78 460 23.43 7e-15 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_A 3 359 + 357 Gaps:26 79.78 460 23.43 7e-15 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_uniprot_sprot sp|Q9LYT3|TT12_ARATH 3 396 + 394 Gaps:1 77.91 507 42.53 1e-108 Protein TRANSPARENT TESTA 12 OS Arabidopsis thaliana GN TT12 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA5|DTX1_ARATH 4 387 + 384 Gaps:5 80.88 476 34.29 6e-65 MATE efflux family protein DTX1 OS Arabidopsis thaliana GN DTX1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LUH2|ALF5_ARATH 3 382 + 380 Gaps:1 79.87 477 34.38 1e-62 MATE efflux family protein ALF5 OS Arabidopsis thaliana GN ALF5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA3|MATE6_ARATH 4 387 + 384 Gaps:3 80.88 476 34.03 3e-61 MATE efflux family protein 6 OS Arabidopsis thaliana GN DTXL2 PE 3 SV 2
blastp_uniprot_sprot sp|Q9LUH3|LAL5_ARATH 4 378 + 375 Gaps:1 80.17 469 32.45 6e-61 MATE efflux family protein LAL5 OS Arabidopsis thaliana GN LAL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GXM8|MATE7_ARATH 4 387 + 384 Gaps:17 80.88 476 33.77 1e-60 MATE efflux family protein 7 OS Arabidopsis thaliana GN DTXL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8RWF5|MATE9_ARATH 4 387 + 384 Gaps:9 79.71 483 33.25 2e-58 MATE efflux family protein 9 OS Arabidopsis thaliana GN DTXL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA4|MATE5_ARATH 4 387 + 384 Gaps:9 80.88 476 32.99 4e-56 MATE efflux family protein 5 OS Arabidopsis thaliana GN DTXL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SIA1|MATE8_ARATH 4 387 + 384 Gaps:9 80.71 477 32.21 1e-55 MATE efflux family protein 8 OS Arabidopsis thaliana GN DTXL4 PE 3 SV 2
blastp_uniprot_sprot sp|A1L1P9|S47A1_DANRE 4 386 + 383 Gaps:3 64.75 590 28.53 7e-39 Multidrug and toxin extrusion protein 1 OS Danio rerio GN slc47a1 PE 2 SV 1
rpsblast_cdd gnl|CDD|30880 3 386 + 384 Gaps:8 84.84 455 24.35 2e-35 COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms].
rpsblast_cdd gnl|CDD|162043 3 297 + 295 Gaps:6 86.84 342 27.27 9e-35 TIGR00797 matE putative efflux protein MATE family. The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus a putative ethionine resistance protein of Saccharomyces cerevisiae and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
rpsblast_cdd gnl|CDD|190033 3 344 + 342 Gaps:8 99.38 161 40.00 3e-18 pfam01554 MatE MatE. The MatE domain.
rpsblast_cdd gnl|CDD|179333 8 369 + 362 Gaps:40 80.70 456 24.18 3e-17 PRK01766 PRK01766 multidrug efflux protein Reviewed.
rpsblast_kog gnl|CDD|36561 3 392 + 390 Gaps:1 82.24 473 44.22 1e-101 KOG1347 KOG1347 KOG1347 Uncharacterized membrane protein predicted efflux pump [General function prediction only].

30 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 316 320 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 346 351 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 3 13 11 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 292 315 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 272 291 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 70 91 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 34 58 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 200 210 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 92 96 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 59 69 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 3 117 115 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
Pfam 179 339 161 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
Phobius 211 230 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 3 397 395 PTHR11206 none none none
TIGRFAM 3 353 351 TIGR00797 "Reactome:REACT_15518","Reactome:REACT_20633" matE: MATE efflux family protein IPR002528
Phobius 97 118 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 130 149 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 19 33 15 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 352 372 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 18 18 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 14 18 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 119 129 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 321 345 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 231 249 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 250 271 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 3 397 395 PTHR11206:SF102 none none none
Phobius 373 406 34 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 150 175 26 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 176 199 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 2 2 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none

10 Localization

Analysis Start End Length
TMHMM 126 148 22
TMHMM 98 120 22
TMHMM 248 270 22
TMHMM 32 54 22
TMHMM 354 376 22
TMHMM 322 344 22
TMHMM 206 228 22
TMHMM 69 91 22
TMHMM 295 317 22
TMHMM 174 196 22

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 50   Secretory pathway 5 0.517 0.178 NON-PLANT 50