Protein : Qrob_P0165630.2 Q. robur
Protein Identifier  ? Qrob_P0165630.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=15) 2.7.7.49 - RNA-directed DNA polymerase. Code Enzyme  EC:2.7.7.49
Gene Prediction Quality  validated Protein length 

Sequence

Length: 736  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0006397 mRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103328889 3 735 + 733 Gaps:8 99.86 734 84.99 0.0 uncharacterized mitochondrial protein ymf11
blastp_kegg lcl|cit:102615743 3 735 + 733 Gaps:10 99.86 730 84.77 0.0 uncharacterized LOC102615743
blastp_kegg lcl|tcc:TCM_015796 3 735 + 733 Gaps:9 99.86 733 84.56 0.0 Intron maturase isoform 1
blastp_kegg lcl|pper:PRUPE_ppb001514mg 3 735 + 733 Gaps:11 99.86 739 84.15 0.0 hypothetical protein
blastp_kegg lcl|mdm:103436941 3 735 + 733 Gaps:10 99.86 738 83.85 0.0 uncharacterized mitochondrial protein ymf11
blastp_kegg lcl|rcu:RCOM_0519900 4 735 + 732 Gaps:10 99.73 732 83.84 0.0 RNA binding protein putative (EC:2.7.7.49)
blastp_kegg lcl|pxb:103961086 4 735 + 732 Gaps:10 99.73 738 83.29 0.0 uncharacterized mitochondrial protein ymf11
blastp_kegg lcl|fve:101298224 3 735 + 733 Gaps:4 99.86 732 81.94 0.0 uncharacterized mitochondrial protein ymf11-like
blastp_kegg lcl|vvi:100259239 1 735 + 735 Gaps:17 99.60 749 81.77 0.0 uncharacterized LOC100259239
blastp_kegg lcl|cmo:103503499 3 728 + 726 Gaps:17 99.17 721 83.08 0.0 uncharacterized mitochondrial protein ymf11
blastp_uniprot_sprot sp|P38456|YMF11_MARPO 185 642 + 458 Gaps:125 64.34 732 26.96 3e-37 Uncharacterized mitochondrial protein ymf11 OS Marchantia polymorpha GN YMF11 PE 4 SV 1
blastp_uniprot_sprot sp|P0A3U1|LTRA_LACLM 88 601 + 514 Gaps:100 80.80 599 26.65 5e-23 Group II intron-encoded protein LtrA OS Lactococcus lactis subsp. cremoris (strain MG1363) GN ltrA PE 1 SV 1
blastp_uniprot_sprot sp|P0A3U0|LTRA_LACLC 88 601 + 514 Gaps:100 80.80 599 26.65 5e-23 Group II intron-encoded protein LtrA OS Lactococcus lactis subsp. cremoris GN ltrA PE 1 SV 1
blastp_uniprot_sprot sp|B1N1A3|NICA_PSEPU 86 596 + 511 Gaps:89 77.99 618 25.10 5e-22 Putative nicotine oxidoreductase OS Pseudomonas putida GN nicA PE 4 SV 1
blastp_uniprot_sprot sp|Q47688|YKFC_ECOLI 182 492 + 311 Gaps:71 70.74 376 31.95 9e-20 Putative uncharacterized protein YkfC OS Escherichia coli (strain K12) GN ykfC PE 5 SV 2
blastp_uniprot_sprot sp|P38478|YMF40_MARPO 171 449 + 279 Gaps:61 50.60 502 30.31 2e-17 Uncharacterized mitochondrial protein ymf40 OS Marchantia polymorpha GN YMF40 PE 4 SV 1
blastp_uniprot_sprot sp|P03875|AI1M_YEAST 185 588 + 404 Gaps:76 45.56 834 25.53 2e-17 Putative COX1/OXI3 intron 1 protein OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN aI1 PE 1 SV 2
blastp_uniprot_sprot sp|P05511|YMC6_SCHPO 176 581 + 406 Gaps:77 45.97 807 24.80 5e-17 Uncharacterized 91 kDa protein in cob intron OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPMIT.06 PE 4 SV 4
blastp_uniprot_sprot sp|P03876|AI2M_YEAST 185 579 + 395 Gaps:62 43.44 854 25.88 2e-15 Putative COX1/OXI3 intron 2 protein OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN aI2 PE 1 SV 2
rpsblast_cdd gnl|CDD|73157 182 458 + 277 Gaps:72 92.48 226 40.19 2e-39 cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements which lack long terminal repeats (LTRs)..
rpsblast_cdd gnl|CDD|110356 486 592 + 107 Gaps:3 73.24 142 27.88 7e-07 pfam01348 Intron_maturas2 Type II intron maturase. Group II introns use intron-encoded reverse transcriptase maturase and DNA endonuclease activities for site-specific insertion into DNA. Although this type of intron is self splicing in vitro they require a maturase protein for splicing in vivo. It has been shown that a specific region of the aI2 intron is needed for the maturase function. This region was found to be conserved in group II introns and called domain X.
rpsblast_kog gnl|CDD|39965 185 581 + 397 Gaps:60 46.36 796 24.66 4e-25 KOG4768 KOG4768 KOG4768 Mitochondrial mRNA maturase [RNA processing and modification].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 140 267 128 SSF56672 none none none
SUPERFAMILY 395 487 93 SSF56672 none none none
SUPERFAMILY 312 357 46 SSF56672 none none none
Pfam 487 598 112 PF01348 none Type II intron maturase IPR024937
Pfam 182 454 273 PF00078 none Reverse transcriptase (RNA-dependent DNA polymerase) IPR000477

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 54   Mitochondrion 3 0.051 0.742 NON-PLANT 54