Protein : Qrob_P0165530.2 Q. robur
Protein Identifier  ? Qrob_P0165530.2 Organism . Name  Quercus robur
Score  54.0 Score Type  egn
Protein Description  (M=1) KOG0078//KOG0080//KOG0083//KOG0084//KOG0086//KOG0087//KOG0092//KOG0094//KOG0095//KOG0098 - GTP-binding protein SEC4 small G protein superfamily and related Ras family GTP-binding proteins [Signal transduction mechanisms Intracellular trafficking secretion and vesicular transport]. // GTPase Rab18 small G protein superfamily [General function prediction only]. // GTPase Rab26/Rab37 small G protein superfamily [General function prediction only]. // GTPase Rab1/YPT1 small G protein superfamily and related GTP-binding proteins [Signal transduction mechanisms Intracellular trafficking secretion and vesicular transport]. // GTPase Rab4 small G protein superfamily [Intracellular trafficking secretion and vesicular transport]. // GTPase Rab11/YPT3 small G protein superfamily [Intracellular trafficking secretion and vesicular transport]. // GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking secretion and vesicular transport]. // GTPase Rab6/YPT6/Ryh1 small G protein superfamily [Intracellular trafficking secretion and vesicular transport]. // GTPase Rab30 small G protein superfamily [Intracellular trafficking secretion and vesicular transport]. // GTPase Rab2 small G protein superfamily [Intracellular trafficking secretion and vesicular transport]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 470  
Kegg Orthology  K07893
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0 Synonyms

12 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0007165 signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0015031 protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0007264 small GTPase mediated signal transduction Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO:0003924 GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO:0006913 nucleocytoplasmic transport The directed movement of molecules between the nucleus and the cytoplasm.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103503500 300 469 + 170 none 81.73 208 91.18 2e-101 ras-related protein RABH1b
blastp_kegg lcl|csv:101228969 300 469 + 170 none 81.73 208 91.18 2e-101 ras-related protein RABH1b-like
blastp_kegg lcl|csv:101204395 300 469 + 170 none 81.73 208 91.18 2e-101 ras-related protein RABH1b-like
blastp_kegg lcl|rcu:RCOM_0519920 300 469 + 170 none 81.73 208 90.00 6e-100 protein with unknown function
blastp_kegg lcl|rcu:RCOM_0658840 300 469 + 170 none 81.73 208 88.82 2e-99 protein with unknown function (EC:3.1.4.12)
blastp_kegg lcl|tcc:TCM_005800 300 469 + 170 none 81.73 208 88.82 4e-99 Ras-related small GTP-binding family protein
blastp_kegg lcl|gmx:100795325 300 469 + 170 Gaps:1 81.64 207 90.53 6e-99 ras-related protein RABH1b-like
blastp_kegg lcl|pop:POPTR_0003s08490g 300 469 + 170 none 94.97 179 88.82 2e-98 hypothetical protein
blastp_kegg lcl|vvi:100263235 300 469 + 170 none 81.73 208 87.65 3e-98 ras-related protein RABH1b-like
blastp_kegg lcl|pper:PRUPE_ppa011501mg 300 469 + 170 none 81.73 208 87.65 4e-98 hypothetical protein
blastp_pdb 3bbp_C 300 467 + 168 Gaps:6 77.73 211 70.73 9e-72 mol:protein length:211 Ras-related protein Rab-6A
blastp_pdb 3bbp_B 300 467 + 168 Gaps:6 77.73 211 70.73 9e-72 mol:protein length:211 Ras-related protein Rab-6A
blastp_pdb 3bbp_A 300 467 + 168 Gaps:6 77.73 211 70.73 9e-72 mol:protein length:211 Ras-related protein Rab-6A
blastp_pdb 3cwz_A 300 451 + 152 none 80.85 188 71.71 7e-71 mol:protein length:188 Ras-related protein Rab-6A
blastp_pdb 2y8e_B 300 435 + 136 none 75.98 179 76.47 2e-66 mol:protein length:179 RAB-PROTEIN 6
blastp_pdb 2y8e_A 300 435 + 136 none 75.98 179 76.47 2e-66 mol:protein length:179 RAB-PROTEIN 6
blastp_pdb 1yzq_A 300 434 + 135 none 79.41 170 77.04 3e-66 mol:protein length:170 small GTP binding protein RAB6 isoform
blastp_pdb 2gil_D 300 431 + 132 none 81.48 162 76.52 3e-64 mol:protein length:162 Ras-related protein Rab-6A
blastp_pdb 2gil_C 300 431 + 132 none 81.48 162 76.52 3e-64 mol:protein length:162 Ras-related protein Rab-6A
blastp_pdb 2gil_B 300 431 + 132 none 81.48 162 76.52 3e-64 mol:protein length:162 Ras-related protein Rab-6A
blastp_uniprot_sprot sp|O80501|RAH1B_ARATH 300 469 + 170 none 81.73 208 85.88 2e-97 Ras-related protein RABH1b OS Arabidopsis thaliana GN RABH1B PE 1 SV 1
blastp_uniprot_sprot sp|Q9LFT9|RAH1E_ARATH 300 469 + 170 Gaps:1 81.64 207 82.25 2e-89 Ras-related protein RABH1e OS Arabidopsis thaliana GN RABH1E PE 2 SV 1
blastp_uniprot_sprot sp|Q9SID8|RAH1D_ARATH 300 469 + 170 Gaps:1 81.64 207 79.29 4e-84 Ras-related protein RABH1d OS Arabidopsis thaliana GN RABH1D PE 3 SV 1
blastp_uniprot_sprot sp|Q5RAV6|RAB6A_PONAB 300 469 + 170 Gaps:6 79.81 208 71.69 2e-74 Ras-related protein Rab-6A OS Pongo abelii GN RAB6A PE 2 SV 3
blastp_uniprot_sprot sp|P20340|RAB6A_HUMAN 300 469 + 170 Gaps:6 79.81 208 71.69 2e-74 Ras-related protein Rab-6A OS Homo sapiens GN RAB6A PE 1 SV 3
blastp_uniprot_sprot sp|Q1KME6|RAB6A_CHICK 300 469 + 170 Gaps:6 79.81 208 71.69 3e-74 Ras-related protein Rab-6A OS Gallus gallus GN RAB6A PE 2 SV 3
blastp_uniprot_sprot sp|Q9WVB1|RAB6A_RAT 300 469 + 170 Gaps:6 79.81 208 71.08 4e-74 Ras-related protein Rab-6A OS Rattus norvegicus GN Rab6a PE 2 SV 2
blastp_uniprot_sprot sp|P35279|RAB6A_MOUSE 300 469 + 170 Gaps:6 79.81 208 71.08 4e-74 Ras-related protein Rab-6A OS Mus musculus GN Rab6a PE 1 SV 4
blastp_uniprot_sprot sp|Q9SMR4|RAH1C_ARATH 302 469 + 168 Gaps:6 81.31 214 73.56 5e-74 Ras-related protein RABH1c OS Arabidopsis thaliana GN RABH1C PE 1 SV 1
blastp_uniprot_sprot sp|Q9LV79|RAH1A_ARATH 300 469 + 170 none 82.52 206 71.18 3e-73 Ras-related protein RABH1a OS Arabidopsis thaliana GN RABH1A PE 2 SV 1

22 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 251 469 219 PS51419 none small GTPase Rab1 family profile. none
PANTHER 301 469 169 PTHR24073:SF318 none none none
SMART 309 433 125 SM00174 "Reactome:REACT_11044" Rho (Ras homology) subfamily of Ras-like small GTPases IPR003578
ProSiteProfiles 62 119 58 PS51032 none AP2/ERF domain profile. IPR001471
Pfam 61 111 51 PF00847 none AP2 domain IPR001471
SMART 277 469 193 SM00176 none Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases IPR002041
SUPERFAMILY 297 443 147 SSF52540 none none IPR027417
Pfam 298 430 133 PF00071 none Ras family IPR001806
SMART 280 434 155 SM00173 none Ras subfamily of RAS small GTPases IPR020849
Gene3D 62 121 60 G3DSA:3.30.730.10 none none IPR001471
PANTHER 301 469 169 PTHR24073 none none none
Gene3D 297 468 172 G3DSA:3.40.50.300 none none IPR027417
SMART 62 125 64 SM00380 none DNA-binding domain in plant proteins such as APETALA2 and EREBPs IPR001471
PRINTS 85 101 17 PR00367 none Ethylene responsive element binding protein signature IPR001471
PRINTS 63 74 12 PR00367 none Ethylene responsive element binding protein signature IPR001471
TIGRFAM 302 425 124 TIGR00231 none small_GTP: small GTP-binding protein domain IPR005225
PRINTS 294 310 17 PR00449 none Transforming protein P21 ras signature IPR001806
PRINTS 374 387 14 PR00449 none Transforming protein P21 ras signature IPR001806
PRINTS 409 431 23 PR00449 none Transforming protein P21 ras signature IPR001806
PRINTS 312 334 23 PR00449 none Transforming protein P21 ras signature IPR001806
SMART 297 434 138 SM00175 none Rab subfamily of small GTPases IPR003579
SUPERFAMILY 62 121 60 SSF54171 none none IPR016177

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting