Protein : Qrob_P0165510.2 Q. robur
Protein Identifier  ? Qrob_P0165510.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K14326 - regulator of nonsense transcripts 1 [EC:3.6.4.-] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 399  
Kegg Orthology  K14326
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0004386 helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103437028 1 337 + 337 Gaps:72 65.12 582 77.57 1e-95 regulator of nonsense transcripts 1 homolog
blastp_kegg lcl|mdm:103409468 1 337 + 337 Gaps:72 29.54 1283 77.57 2e-91 regulator of nonsense transcripts 1 homolog
blastp_kegg lcl|pxb:103959071 1 337 + 337 Gaps:72 29.49 1285 77.57 3e-91 regulator of nonsense transcripts 1 homolog
blastp_kegg lcl|pxb:103933278 1 337 + 337 Gaps:72 29.91 1267 77.31 6e-91 regulator of nonsense transcripts 1 homolog
blastp_kegg lcl|mdm:103439095 1 337 + 337 Gaps:69 29.54 1273 77.13 1e-90 regulator of nonsense transcripts 1 homolog
blastp_kegg lcl|pmum:103328883 1 337 + 337 Gaps:72 29.75 1274 77.57 3e-90 regulator of nonsense transcripts 1 homolog
blastp_kegg lcl|pper:PRUPE_ppa000334mg 1 337 + 337 Gaps:72 29.70 1276 77.31 2e-89 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_002G003300g 1 337 + 337 Gaps:72 30.21 1248 76.66 1e-88 hypothetical protein
blastp_kegg lcl|pxb:103961082 1 337 + 337 Gaps:80 29.93 1293 75.19 3e-88 regulator of nonsense transcripts 1 homolog
blastp_kegg lcl|fve:101299192 1 337 + 337 Gaps:68 29.99 1277 76.50 1e-87 regulator of nonsense transcripts 1 homolog
blastp_pdb 2wjy_A 146 337 + 192 Gaps:53 30.00 800 57.50 2e-55 mol:protein length:800 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2wjv_B 146 337 + 192 Gaps:53 30.00 800 57.50 2e-55 mol:protein length:800 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2wjv_A 146 337 + 192 Gaps:53 30.00 800 57.50 2e-55 mol:protein length:800 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2xzp_A 250 337 + 88 Gaps:3 14.29 623 65.17 3e-29 mol:protein length:623 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2xzo_A 250 337 + 88 Gaps:3 14.29 623 65.17 3e-29 mol:protein length:623 REGULATOR OF NONSENSE TRANSCRIPTS 1
blastp_pdb 2gk7_A 250 337 + 88 Gaps:3 14.26 624 65.17 4e-29 mol:protein length:624 Regulator of nonsense transcripts 1
blastp_pdb 2gk6_B 250 337 + 88 Gaps:3 14.26 624 65.17 4e-29 mol:protein length:624 Regulator of nonsense transcripts 1
blastp_pdb 2gk6_A 250 337 + 88 Gaps:3 14.26 624 65.17 4e-29 mol:protein length:624 Regulator of nonsense transcripts 1
blastp_pdb 2gjk_A 250 337 + 88 Gaps:3 14.26 624 65.17 4e-29 mol:protein length:624 Regulator of nonsense transcripts 1
blastp_pdb 2xzl_A 148 337 + 190 Gaps:55 30.30 802 36.63 3e-26 mol:protein length:802 ATP-DEPENDENT HELICASE NAM7
blastp_uniprot_sprot sp|Q9FJR0|RENT1_ARATH 1 337 + 337 Gaps:72 30.38 1254 65.88 3e-77 Regulator of nonsense transcripts 1 homolog OS Arabidopsis thaliana GN UPF1 PE 1 SV 2
blastp_uniprot_sprot sp|Q98TR3|RENT1_TAKRU 126 337 + 212 Gaps:57 23.52 1097 56.20 1e-52 Putative regulator of nonsense transcripts 1 OS Takifugu rubripes GN rent1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9EPU0|RENT1_MOUSE 126 337 + 212 Gaps:67 23.84 1124 52.99 5e-48 Regulator of nonsense transcripts 1 OS Mus musculus GN Upf1 PE 1 SV 2
blastp_uniprot_sprot sp|Q92900|RENT1_HUMAN 126 337 + 212 Gaps:67 23.74 1129 52.99 5e-48 Regulator of nonsense transcripts 1 OS Homo sapiens GN UPF1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9VYS3|RENT1_DROME 126 336 + 211 Gaps:54 22.37 1180 45.45 4e-37 Regulator of nonsense transcripts 1 homolog OS Drosophila melanogaster GN Upf1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9HEH1|RENT1_NEUCR 150 337 + 188 Gaps:58 22.69 1093 41.94 1e-34 Regulator of nonsense transcripts 1 homolog OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN 2E4.130 PE 3 SV 1
blastp_uniprot_sprot sp|Q09820|RENT1_SCHPO 93 336 + 244 Gaps:75 30.49 925 39.36 3e-30 ATP-dependent helicase upf1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN upf1 PE 3 SV 2
blastp_uniprot_sprot sp|P30771|NAM7_YEAST 148 337 + 190 Gaps:55 24.82 971 36.93 8e-26 ATP-dependent helicase NAM7 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN NAM7 PE 1 SV 1
blastp_uniprot_sprot sp|O76512|RENT1_CAEEL 113 336 + 224 Gaps:67 27.60 1069 34.24 2e-18 Regulator of nonsense transcripts 1 OS Caenorhabditis elegans GN smg-2 PE 1 SV 1
blastp_uniprot_sprot sp|Q54I89|RENT1_DICDI 96 336 + 241 Gaps:59 21.71 1331 31.83 4e-18 Regulator of nonsense transcripts 1 OS Dictyostelium discoideum GN upf1 PE 3 SV 1

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 98 338 241 PTHR10887 none none none
PANTHER 98 338 241 PTHR10887:SF340 none none none
Pfam 150 195 46 PF09416 none RNA helicase (UPF2 interacting domain) IPR018999

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting