Protein : Qrob_P0162920.2 Q. robur
Protein Identifier  ? Qrob_P0162920.2 Organism . Name  Quercus robur
Score  96.0 Score Type  egn
Protein Description  (M=1) PTHR10322//PTHR10322:SF18 - DNA POLYMERASE CATALYTIC SUBUNIT // SUBFAMILY NOT NAMED Code Enzyme  EC:2.7.7.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 626  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006260 DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO:0003887 DNA-directed DNA polymerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
GO:0006270 DNA replication initiation The process in which DNA-dependent DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action.

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000171mg 1 470 + 470 Gaps:45 26.42 1537 63.55 1e-94 hypothetical protein
blastp_kegg lcl|pmum:103339901 1 470 + 470 Gaps:45 26.42 1537 62.56 9e-93 DNA polymerase alpha catalytic subunit
blastp_kegg lcl|cmo:103497378 1 469 + 469 Gaps:44 27.26 1548 59.95 1e-86 DNA polymerase alpha catalytic subunit
blastp_kegg lcl|pxb:103956910 1 470 + 470 Gaps:42 26.83 1532 61.07 5e-86 DNA polymerase alpha catalytic subunit-like
blastp_kegg lcl|csv:101211201 1 469 + 469 Gaps:41 27.21 1547 59.62 5e-86 DNA polymerase alpha catalytic subunit-like
blastp_kegg lcl|vvi:100250805 1 469 + 469 Gaps:41 25.89 1522 63.20 9e-86 DNA polymerase alpha catalytic subunit-like
blastp_kegg lcl|pxb:103935249 1 470 + 470 Gaps:58 25.86 1512 63.17 1e-82 DNA polymerase alpha catalytic subunit-like
blastp_kegg lcl|fve:101296527 1 469 + 469 Gaps:40 26.31 1532 58.06 4e-81 DNA polymerase alpha catalytic subunit-like
blastp_kegg lcl|pxb:103935140 1 470 + 470 Gaps:41 26.74 1533 60.73 6e-81 DNA polymerase alpha catalytic subunit-like
blastp_kegg lcl|mdm:103401388 1 470 + 470 Gaps:51 26.74 1533 60.73 7e-80 DNA polymerase alpha catalytic subunit
blastp_uniprot_sprot sp|Q9FHA3|DPOLA_ARATH 1 479 + 479 Gaps:62 27.89 1524 46.82 3e-54 DNA polymerase alpha catalytic subunit OS Arabidopsis thaliana GN POLA PE 3 SV 2
blastp_uniprot_sprot sp|O48653|DPOLA_ORYSJ 3 479 + 477 Gaps:70 29.27 1534 46.99 1e-48 DNA polymerase alpha catalytic subunit OS Oryza sativa subsp. japonica GN Os01g0868300 PE 2 SV 2
rpsblast_cdd gnl|CDD|192970 26 95 + 70 Gaps:6 95.52 67 50.00 2e-15 pfam12254 DNA_pol_alpha_N DNA polymerase alpha subunit p180 N terminal. This domain family is found in eukaryotes and is approximately 70 amino acids in length. The family is found in association with pfam00136 pfam08996 pfam03104. This family is the N terminal of DNA polymerase alpha subunit p180 protein. The N terminal contains the catalytic region of the alpha subunit.
rpsblast_kog gnl|CDD|36188 1 312 + 312 Gaps:33 20.22 1429 26.30 2e-26 KOG0970 KOG0970 KOG0970 DNA polymerase alpha catalytic subunit [Replication recombination and repair].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 545 545 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 26 98 73 PF12254 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7" DNA polymerase alpha subunit p180 N terminal IPR024647
PANTHER 17 207 191 PTHR10322:SF18 "KEGG:00230+2.7.7.7","KEGG:00240+2.7.7.7";signature_desc=SUBFAMILY NOT NAMED none IPR029702
Phobius 577 625 49 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 17 207 191 PTHR10322 none none none
Phobius 546 576 31 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 73   Mitochondrion 4 0.024 0.698 NON-PLANT 73