Protein : Qrob_P0162900.2 Q. robur
Protein Identifier  ? Qrob_P0162900.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=7) PTHR12565//PTHR12565:SF80 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 407  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103339903 36 406 + 371 Gaps:56 89.45 417 64.88 1e-142 transcription factor SPATULA
blastp_kegg lcl|vvi:100245665 36 406 + 371 Gaps:16 93.65 394 61.52 5e-135 uncharacterized LOC100245665
blastp_kegg lcl|pxb:103956929 1 406 + 406 Gaps:52 99.21 381 59.26 1e-128 transcription factor SPATULA-like
blastp_kegg lcl|pxb:103935247 1 406 + 406 Gaps:50 99.22 383 59.47 1e-126 transcription factor SPATULA-like
blastp_kegg lcl|mdm:103403203 1 406 + 406 Gaps:51 99.21 382 60.16 5e-125 transcription factor SPATULA-like
blastp_kegg lcl|tcc:TCM_000649 36 406 + 371 Gaps:32 79.60 451 59.61 2e-119 Basic helix-loop-helix DNA-binding superfamily protein putative isoform 1
blastp_kegg lcl|cic:CICLE_v10025735mg 4 406 + 403 Gaps:30 98.04 409 54.61 7e-113 hypothetical protein
blastp_kegg lcl|cit:102617525 4 406 + 403 Gaps:37 98.07 414 54.19 8e-112 transcription factor SPATULA-like
blastp_kegg lcl|mdm:103425107 1 380 + 380 Gaps:78 95.44 373 62.08 1e-110 transcription factor SPATULA-like
blastp_kegg lcl|mdm:103401390 1 380 + 380 Gaps:78 95.44 373 62.08 1e-110 transcription factor SPATULA
blastp_uniprot_sprot sp|Q9FUA4|SPT_ARATH 116 331 + 216 Gaps:28 53.08 373 58.59 7e-51 Transcription factor SPATULA OS Arabidopsis thaliana GN SPT PE 1 SV 1
blastp_uniprot_sprot sp|Q9FHA2|ALC_ARATH 26 221 + 196 Gaps:43 73.81 210 58.71 8e-33 Transcription factor ALC OS Arabidopsis thaliana GN ALC PE 2 SV 1
blastp_uniprot_sprot sp|O80536|PIF3_ARATH 147 220 + 74 none 14.12 524 75.68 3e-27 Transcription factor PIF3 OS Arabidopsis thaliana GN PIF3 PE 1 SV 1
blastp_uniprot_sprot sp|Q8GZM7|PIF1_ARATH 118 209 + 92 Gaps:9 17.36 478 71.08 7e-27 Transcription factor PIF1 OS Arabidopsis thaliana GN PIF1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8GZ38|UNE10_ARATH 107 211 + 105 Gaps:8 26.32 399 54.29 3e-23 Transcription factor UNE10 OS Arabidopsis thaliana GN UNE10 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SVU6|BH023_ARATH 78 234 + 157 Gaps:16 40.44 413 40.12 3e-22 Transcription factor bHLH23 OS Arabidopsis thaliana GN BHLH23 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L5W8|PIL1_ARATH 139 263 + 125 Gaps:27 30.29 416 46.03 3e-21 Transcription factor PIL1 OS Arabidopsis thaliana GN PIL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q84LH8|PIF5_ARATH 145 234 + 90 Gaps:6 21.62 444 57.29 9e-21 Transcription factor PIF5 OS Arabidopsis thaliana GN PIF5 PE 1 SV 1
blastp_uniprot_sprot sp|Q8W2F3|PIF4_ARATH 145 229 + 85 Gaps:5 20.47 430 64.77 1e-20 Transcription factor PIF4 OS Arabidopsis thaliana GN PIF4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LSQ3|BH082_ARATH 143 209 + 67 none 22.56 297 59.70 5e-19 Transcription factor bHLH82 OS Arabidopsis thaliana GN BHLH82 PE 2 SV 1
rpsblast_cdd gnl|CDD|197674 157 205 + 49 Gaps:3 98.11 53 44.23 9e-13 smart00353 HLH helix loop helix domain.
rpsblast_cdd gnl|CDD|28964 154 205 + 52 Gaps:3 91.67 60 45.45 3e-11 cd00083 HLH Helix-loop-helix domain found in specific DNA- binding proteins that act as transcription factors 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region HLH forms homo- and heterodimers dimerization creates a parallel left-handed four helix bundle the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3) those lacking the basic domain (Emc Id) function as negative regulators since they fail to bind DNA those (hairy E(spl) deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3) those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins the binding of small molecules (e.g. dioxin) and interactions with non-PAS proteins..
rpsblast_cdd gnl|CDD|200925 154 201 + 48 Gaps:2 96.15 52 46.00 4e-11 pfam00010 HLH Helix-loop-helix DNA-binding domain.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 190 211 22 Coil none none none
SUPERFAMILY 148 211 64 SSF47459 none none IPR011598
PANTHER 114 234 121 PTHR12565 none none none
SMART 157 206 50 SM00353 none helix loop helix domain IPR011598
ProSiteProfiles 151 200 50 PS50888 none Myc-type, basic helix-loop-helix (bHLH) domain profile. IPR011598
Pfam 155 201 47 PF00010 none Helix-loop-helix DNA-binding domain IPR011598
PANTHER 114 234 121 PTHR12565:SF80 none none IPR031066
Gene3D 148 211 64 G3DSA:4.10.280.10 none none IPR011598

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

0 Targeting