Protein : Qrob_P0162660.2 Q. robur
Protein Identifier  ? Qrob_P0162660.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=5) K09284 - AP2-like factor, euAP2 lineage Gene Prediction Quality  validated
Protein length 

Sequence

Length: 510  
Kegg Orthology  K09284
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0007275 multicellular organismal development The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100268051 1 509 + 509 Gaps:70 100.00 511 70.06 0.0 AP2 transcription factor APETALA2
blastp_kegg lcl|tcc:TCM_000665 1 509 + 509 Gaps:63 100.00 510 70.78 0.0 Eukaryotic elongation factor 5A-1 isoform 3
blastp_kegg lcl|pop:POPTR_0007s10780g 1 509 + 509 Gaps:69 100.00 534 64.98 0.0 POPTRDRAFT_655117 APETAL2-like family protein
blastp_kegg lcl|pvu:PHAVU_003G241900g 1 509 + 509 Gaps:84 100.00 517 67.89 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_002G016900g 1 509 + 509 Gaps:73 100.00 504 66.27 0.0 hypothetical protein
blastp_kegg lcl|mdm:103445097 1 507 + 507 Gaps:69 99.82 549 62.59 0.0 AHAP2 AP2D40 floral homeotic protein APETALA 2
blastp_kegg lcl|mtr:MTR_5g016810 1 509 + 509 Gaps:64 100.00 511 66.54 0.0 Transcription factor APETALA2
blastp_kegg lcl|pper:PRUPE_ppa003783mg 1 507 + 507 Gaps:75 99.82 549 64.05 3e-179 hypothetical protein
blastp_kegg lcl|cam:101495928 1 509 + 509 Gaps:74 100.00 511 63.21 2e-176 floral homeotic protein APETALA 2-like
blastp_kegg lcl|pxb:103961581 1 507 + 507 Gaps:71 96.34 573 61.23 1e-175 floral homeotic protein APETALA 2-like
blastp_uniprot_sprot sp|P47927|AP2_ARATH 1 324 + 324 Gaps:78 73.15 432 71.52 2e-116 Floral homeotic protein APETALA 2 OS Arabidopsis thaliana GN AP2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FH95|TOE3_ARATH 1 327 + 327 Gaps:91 79.55 352 63.93 3e-84 AP2-like ethylene-responsive transcription factor TOE3 OS Arabidopsis thaliana GN TOE3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SK03|RAP27_ARATH 1 325 + 325 Gaps:76 71.49 449 52.34 3e-62 Ethylene-responsive transcription factor RAP2-7 OS Arabidopsis thaliana GN RAP2-7 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LVG2|TOE2_ARATH 144 344 + 201 Gaps:49 42.06 485 53.92 3e-45 AP2-like ethylene-responsive transcription factor TOE2 OS Arabidopsis thaliana GN TOE2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6PQQ3|AIL5_ARATH 137 298 + 162 Gaps:39 34.59 558 54.40 2e-36 AP2-like ethylene-responsive transcription factor AIL5 OS Arabidopsis thaliana GN AIL5 PE 2 SV 2
blastp_uniprot_sprot sp|Q1PFE1|AIL1_ARATH 157 298 + 142 Gaps:41 50.60 415 47.62 5e-36 AP2-like ethylene-responsive transcription factor AIL1 OS Arabidopsis thaliana GN AIL1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5YGP7|PLET2_ARATH 157 332 + 176 Gaps:43 38.56 568 48.40 1e-35 AP2-like ethylene-responsive transcription factor PLT2 OS Arabidopsis thaliana GN PLT2 PE 2 SV 1
blastp_uniprot_sprot sp|Q38914|ANT_ARATH 157 312 + 156 Gaps:43 36.58 555 48.77 1e-35 AP2-like ethylene-responsive transcription factor ANT OS Arabidopsis thaliana GN ANT PE 1 SV 2
blastp_uniprot_sprot sp|Q8LSN2|BBM2_BRANA 129 298 + 170 Gaps:41 34.20 579 49.49 2e-34 AP2-like ethylene-responsive transcription factor BBM2 OS Brassica napus GN BBM2 PE 2 SV 1
blastp_uniprot_sprot sp|Q5YGP8|PLET1_ARATH 140 298 + 159 Gaps:40 32.23 574 52.43 2e-34 AP2-like ethylene-responsive transcription factor PLT1 OS Arabidopsis thaliana GN PLT1 PE 2 SV 1
rpsblast_cdd gnl|CDD|197689 160 296 + 137 Gaps:22 100.00 64 56.25 6e-22 smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
rpsblast_cdd gnl|CDD|28902 232 292 + 61 none 100.00 61 50.82 4e-17 cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE) a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1 which is involved in stress response contain a single copy of the AP2 domain. APETALA2-like proteins which play a role in plant development contain two copies..
rpsblast_cdd gnl|CDD|201470 232 282 + 51 Gaps:4 100.00 53 47.17 2e-07 pfam00847 AP2 AP2 domain. This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 234 245 12 PR00367 none Ethylene responsive element binding protein signature IPR001471
PRINTS 272 292 21 PR00367 none Ethylene responsive element binding protein signature IPR001471
Pfam 232 282 51 PF00847 none AP2 domain IPR001471
SUPERFAMILY 232 292 61 SSF54171 none none IPR016177
PANTHER 108 427 320 PTHR32467 none none IPR031112
PANTHER 108 427 320 PTHR32467:SF6 none none none
SMART 160 203 44 SM00380 none DNA-binding domain in plant proteins such as APETALA2 and EREBPs IPR001471
SMART 233 296 64 SM00380 none DNA-binding domain in plant proteins such as APETALA2 and EREBPs IPR001471
Gene3D 233 290 58 G3DSA:3.30.730.10 none none IPR001471
ProSiteProfiles 233 290 58 PS51032 none AP2/ERF domain profile. IPR001471

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9

0 Targeting