Protein : Qrob_P0162310.2 Q. robur
Protein Identifier  ? Qrob_P0162310.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG0263//KOG0266//KOG0267//KOG0271//KOG0272//KOG0274//KOG0285//KOG0292//KOG0295//KOG0305 - Transcription initiation factor TFIID subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]. // WD40 repeat-containing protein [General function prediction only]. // Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control cell division chromosome partitioning]. // Notchless-like WD40 repeat-containing protein [Function unknown]. // U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]. // Cdc4 and related F-box and WD-40 proteins [General function prediction only]. // Pleiotropic regulator 1 [RNA processing and modification]. // Vesicle coat complex COPI alpha subunit [Intracellular trafficking secretion and vesicular transport]. // WD40 repeat-containing protein [Function unknown]. // Anaphase promoting complex Cdc20 Cdh1 and Ama1 subunits [Cell cycle control cell division chromosome partitioning Posttranslational modification protein turnover chaperones]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 631  
Kegg Orthology  K18643
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008017 microtubule binding Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers.
GO:0008352 katanin complex A complex possessing an activity that couples ATP hydrolysis to the severing of microtubules; usually a heterodimer comprising a catalytic subunit (often 60kDa) and a regulatory subunit (often 80 kDa).
GO:0051013 microtubule severing The process in which a microtubule is broken down into smaller segments.

46 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_002G224100g 4 630 + 627 Gaps:107 95.24 651 65.16 0.0 hypothetical protein
blastp_kegg lcl|vvi:100261609 4 403 + 400 Gaps:52 96.33 545 62.86 0.0 katanin p80 WD40 repeat-containing subunit B1 homolog 1-like
blastp_kegg lcl|cmo:103486088 4 627 + 624 Gaps:63 86.44 922 61.10 0.0 katanin p80 WD40 repeat-containing subunit B1 homolog
blastp_kegg lcl|pop:POPTR_0011s04530g 4 630 + 627 Gaps:89 77.17 990 66.88 0.0 hypothetical protein
blastp_kegg lcl|csv:101218078 4 627 + 624 Gaps:40 78.31 922 65.65 1e-180 katanin p80 WD40 repeat-containing subunit B1 homolog
blastp_kegg lcl|pmum:103324665 4 630 + 627 Gaps:57 92.02 852 65.56 2e-179 katanin p80 WD40 repeat-containing subunit B1 homolog
blastp_kegg lcl|cic:CICLE_v10014112mg 4 630 + 627 Gaps:78 70.70 1058 65.91 5e-179 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa001393mg 4 630 + 627 Gaps:62 92.25 839 66.28 8e-179 hypothetical protein
blastp_kegg lcl|cit:102619160 4 630 + 627 Gaps:79 69.83 1074 66.13 1e-178 katanin p80 WD40 repeat-containing subunit B1 homolog
blastp_kegg lcl|gmx:100776214 4 630 + 627 Gaps:89 96.48 824 59.37 2e-178 katanin p80 WD40 repeat-containing subunit B1 homolog
blastp_pdb 2ovr_B 12 255 + 244 Gaps:54 67.87 445 56.95 1e-26 mol:protein length:445 F-box/WD repeat protein 7
blastp_pdb 2ovq_B 12 255 + 244 Gaps:54 67.87 445 56.95 1e-26 mol:protein length:445 F-box/WD repeat protein 7
blastp_pdb 2ovp_B 12 255 + 244 Gaps:54 67.87 445 56.95 1e-26 mol:protein length:445 F-box/WD repeat protein 7
blastp_pdb 2xl3_B 15 255 + 241 Gaps:31 89.82 334 45.00 4e-25 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl3_A 15 255 + 241 Gaps:31 89.82 334 45.00 4e-25 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_B 15 255 + 241 Gaps:31 89.82 334 45.00 4e-25 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_A 15 255 + 241 Gaps:31 89.82 334 45.00 4e-25 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2gnq_A 15 255 + 241 Gaps:31 89.29 336 45.00 5e-25 mol:protein length:336 WD-repeat protein 5
blastp_pdb 4a7j_A 15 255 + 241 Gaps:31 94.34 318 45.00 9e-25 mol:protein length:318 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2co0_A 15 255 + 241 Gaps:31 95.24 315 44.67 9e-25 mol:protein length:315 WD-REPEAT PROTEIN 5
blastp_uniprot_sprot sp|Q8H0T9|KTNB1_ARATH 4 622 + 619 Gaps:13 60.22 837 59.72 2e-150 Katanin p80 WD40 repeat-containing subunit B1 homolog OS Arabidopsis thaliana GN At5g23430 PE 2 SV 3
blastp_uniprot_sprot sp|Q5ZIU8|KTNB1_CHICK 4 621 + 618 Gaps:21 93.76 657 38.64 5e-123 Katanin p80 WD40 repeat-containing subunit B1 OS Gallus gallus GN KATNB1 PE 2 SV 2
blastp_uniprot_sprot sp|Q6NVM2|KTNB1_XENTR 4 621 + 618 Gaps:42 93.74 655 39.25 6e-122 Katanin p80 WD40 repeat-containing subunit B1 OS Xenopus tropicalis GN katnb1 PE 2 SV 1
blastp_uniprot_sprot sp|Q4V7Y7|KTNB1_XENLA 4 621 + 618 Gaps:42 93.74 655 38.76 2e-120 Katanin p80 WD40 repeat-containing subunit B1 OS Xenopus laevis GN katnb1 PE 1 SV 1
blastp_uniprot_sprot sp|Q7ZUV2|KTNB1_DANRE 4 621 + 618 Gaps:87 94.96 694 38.39 9e-119 Katanin p80 WD40 repeat-containing subunit B1 OS Danio rerio GN katnb1 PE 2 SV 1
blastp_uniprot_sprot sp|O61585|KTNB1_STRPU 4 628 + 625 Gaps:6 66.38 690 42.14 8e-106 Katanin p80 WD40 repeat-containing subunit B1 OS Strongylocentrotus purpuratus GN KATNB1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9BVA0|KTNB1_HUMAN 4 621 + 618 Gaps:11 66.26 655 47.93 3e-97 Katanin p80 WD40 repeat-containing subunit B1 OS Homo sapiens GN KATNB1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8BG40|KTNB1_MOUSE 4 621 + 618 Gaps:11 65.81 658 48.27 6e-97 Katanin p80 WD40 repeat-containing subunit B1 OS Mus musculus GN Katnb1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8YRI1|YY46_NOSS1 6 289 + 284 Gaps:35 44.23 1526 55.56 1e-38 Uncharacterized WD repeat-containing protein alr3466 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN alr3466 PE 4 SV 1
blastp_uniprot_sprot sp|Q8YTC2|Y2800_NOSS1 4 289 + 286 Gaps:72 47.77 1258 47.59 1e-36 Uncharacterized WD repeat-containing protein alr2800 OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN alr2800 PE 4 SV 1

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Hamap 2 630 629 MF_03022 none Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. IPR026962
ProSitePatterns 153 167 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
ProSiteProfiles 8 244 237 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
PRINTS 111 125 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 153 167 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 195 209 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
SMART 84 124 41 SM00320 none WD40 repeats IPR001680
SMART 211 249 39 SM00320 none WD40 repeats IPR001680
SMART 169 208 40 SM00320 none WD40 repeats IPR001680
SMART 1 41 41 SM00320 none WD40 repeats IPR001680
SMART 127 166 40 SM00320 none WD40 repeats IPR001680
SMART 44 81 38 SM00320 none WD40 repeats IPR001680
PANTHER 4 630 627 PTHR19845:SF3 none none none
ProSiteProfiles 134 175 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSiteProfiles 51 90 40 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
Pfam 170 208 39 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 12 41 30 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 95 124 30 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 47 81 35 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 130 166 37 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 489 626 138 PF13925 none con80 domain of Katanin IPR028021
SUPERFAMILY 7 289 283 SSF50978 none none IPR017986
Gene3D 10 291 282 G3DSA:2.130.10.10 none none IPR015943
ProSiteProfiles 176 217 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSitePatterns 68 82 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
PANTHER 4 630 627 PTHR19845 none none none
ProSiteProfiles 101 133 33 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSitePatterns 195 209 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775

0 Localization

0 Qtllist

0 Targeting