Protein : Qrob_P0160310.2 Q. robur
Protein Identifier  ? Qrob_P0160310.2 Organism . Name  Quercus robur
Score  91.2 Score Type  egn
Protein Description  (M=2) PTHR12847//PTHR12847:SF4 - ATP-BINDING CASSETTE (ABC) TRANSPORTER-RELATED // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 123  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006897 endocytosis A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101216113 1 122 + 122 Gaps:6 44.60 287 68.75 6e-57 uncharacterized LOC101216113
blastp_kegg lcl|vvi:100245387 5 122 + 118 Gaps:6 24.85 499 74.19 1e-55 uncharacterized LOC100245387
blastp_kegg lcl|tcc:TCM_001687 1 122 + 122 Gaps:10 37.50 352 69.70 2e-55 Adaptin ear-binding coat-associated protein 1 NECAP-1 isoform 1
blastp_kegg lcl|gmx:100799391 1 122 + 122 Gaps:15 44.10 288 72.44 3e-55 uncharacterized LOC100799391
blastp_kegg lcl|eus:EUTSA_v10006125mg 14 122 + 109 Gaps:6 38.46 299 74.78 4e-55 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10016120mg 1 122 + 122 Gaps:10 44.90 294 69.70 1e-54 hypothetical protein
blastp_kegg lcl|cam:101503323 19 122 + 104 Gaps:6 38.87 283 77.27 2e-54 uncharacterized LOC101503323
blastp_kegg lcl|ath:AT3G58600 4 122 + 119 Gaps:7 41.72 302 71.43 2e-54 Adaptin ear-binding coat-associated protein 1 NECAP-1
blastp_kegg lcl|pop:POPTR_0013s12220g 18 122 + 105 Gaps:6 39.08 284 77.48 2e-54 hypothetical protein
blastp_kegg lcl|brp:103862971 3 122 + 120 Gaps:6 42.71 295 70.63 3e-54 uncharacterized protein At1g03900-like
blastp_pdb 1tqz_A 25 122 + 98 Gaps:3 75.94 133 38.61 1e-15 mol:protein length:133 NECAP1
blastp_uniprot_sprot sp|Q9D1J1|NECP2_MOUSE 19 122 + 104 Gaps:4 39.85 266 41.51 3e-17 Adaptin ear-binding coat-associated protein 2 OS Mus musculus GN Necap2 PE 1 SV 1
blastp_uniprot_sprot sp|Q6P756|NECP2_RAT 19 114 + 96 Gaps:1 36.12 263 43.16 7e-17 Adaptin ear-binding coat-associated protein 2 OS Rattus norvegicus GN Necap2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9NVZ3|NECP2_HUMAN 20 114 + 95 none 36.12 263 40.00 1e-16 Adaptin ear-binding coat-associated protein 2 OS Homo sapiens GN NECAP2 PE 1 SV 1
blastp_uniprot_sprot sp|Q5E9Q4|NECP2_BOVIN 19 114 + 96 Gaps:1 35.71 266 42.11 2e-16 Adaptin ear-binding coat-associated protein 2 OS Bos taurus GN NECAP2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9VXB0|NECAP_DROME 25 122 + 98 Gaps:3 41.06 246 34.65 3e-15 NECAP-like protein CG9132 OS Drosophila melanogaster GN CG9132 PE 2 SV 1
blastp_uniprot_sprot sp|Q681Q7|Y1390_ARATH 24 122 + 99 Gaps:4 37.87 272 38.83 6e-15 Uncharacterized protein At1g03900 OS Arabidopsis thaliana GN At1g03900 PE 2 SV 1
blastp_uniprot_sprot sp|Q5R630|NECP1_PONAB 25 110 + 86 none 31.27 275 43.02 6e-15 Adaptin ear-binding coat-associated protein 1 OS Pongo abelii GN NECAP1 PE 2 SV 1
blastp_uniprot_sprot sp|Q8NC96|NECP1_HUMAN 25 111 + 87 none 31.64 275 42.53 6e-15 Adaptin ear-binding coat-associated protein 1 OS Homo sapiens GN NECAP1 PE 1 SV 2
blastp_uniprot_sprot sp|Q3T093|NECP1_BOVIN 25 111 + 87 none 31.64 275 42.53 1e-14 Adaptin ear-binding coat-associated protein 1 OS Bos taurus GN NECAP1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CR95|NECP1_MOUSE 25 111 + 87 none 31.64 275 42.53 2e-14 Adaptin ear-binding coat-associated protein 1 OS Mus musculus GN Necap1 PE 1 SV 2
rpsblast_cdd gnl|CDD|191897 23 107 + 85 Gaps:4 52.53 158 49.40 9e-23 pfam07933 DUF1681 Protein of unknown function (DUF1681). This family is composed of sequences derived from a number of hypothetical eukaryotic proteins of unknown function.
rpsblast_kog gnl|CDD|37711 19 122 + 104 Gaps:3 42.29 253 48.60 1e-34 KOG2500 KOG2500 KOG2500 Uncharacterized conserved protein [Function unknown].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 15 122 108 PTHR12847 none none none
SUPERFAMILY 21 109 89 SSF50729 none none none
Gene3D 28 108 81 G3DSA:2.30.29.30 none none IPR011993
Pfam 24 108 85 PF07933 none Protein of unknown function (DUF1681) IPR012466
PANTHER 15 122 108 PTHR12847:SF4 none none none

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting