Protein : Qrob_P0159490.2 Q. robur
Protein Identifier  ? Qrob_P0159490.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K10631 - E3 ubiquitin-protein ligase Topors [EC:6.3.2.19] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 293  
Kegg Orthology  K10631
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006397 mRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103322940 10 291 + 282 Gaps:13 94.39 285 63.57 1e-110 E3 ubiquitin-protein ligase Topors
blastp_kegg lcl|pxb:103943631 10 291 + 282 Gaps:13 95.39 282 61.71 2e-106 E3 ubiquitin-protein ligase Topors
blastp_kegg lcl|mdm:103452976 10 291 + 282 Gaps:13 95.39 282 61.34 2e-105 E3 ubiquitin-protein ligase Topors
blastp_kegg lcl|fve:101311958 1 292 + 292 Gaps:20 100.00 282 59.22 4e-105 E3 ubiquitin-protein ligase Topors-like
blastp_kegg lcl|tcc:TCM_021158 1 291 + 291 Gaps:19 99.67 301 54.33 2e-104 RING/U-box superfamily protein putative isoform 1
blastp_kegg lcl|vvi:100259613 13 292 + 280 Gaps:12 91.16 294 60.82 5e-101 E3 ubiquitin-protein ligase Topors-like
blastp_kegg lcl|cmo:103497872 1 292 + 292 Gaps:18 100.00 288 56.60 2e-100 E3 ubiquitin-protein ligase Topors
blastp_kegg lcl|cic:CICLE_v10005542mg 11 291 + 281 Gaps:7 93.20 294 59.49 4e-100 hypothetical protein
blastp_kegg lcl|cit:102607299 11 291 + 281 Gaps:7 93.20 294 59.12 1e-99 E3 ubiquitin-protein ligase Topors-like
blastp_kegg lcl|csv:101215841 1 292 + 292 Gaps:18 100.00 288 56.25 1e-97 E3 ubiquitin-protein ligase Topors-like
blastp_pdb 2ep4_A 28 69 + 42 none 56.76 74 40.48 3e-06 mol:protein length:74 RING finger protein 24
blastp_uniprot_sprot sp|Q80Z37|TOPRS_MOUSE 6 289 + 284 Gaps:50 28.65 1033 28.04 2e-14 E3 ubiquitin-protein ligase Topors OS Mus musculus GN Topors PE 1 SV 1
blastp_uniprot_sprot sp|Q9NS56|TOPRS_HUMAN 6 289 + 284 Gaps:49 28.23 1045 28.14 3e-13 E3 ubiquitin-protein ligase Topors OS Homo sapiens GN TOPORS PE 1 SV 1
blastp_uniprot_sprot sp|P29129|ICP0_SUHVF 28 140 + 113 Gaps:6 26.59 410 32.11 2e-07 E3 ubiquitin-protein ligase ICP0 OS Suid herpesvirus 1 (strain Indiana-Funkhauser / Becker) GN EP0 PE 2 SV 1
blastp_uniprot_sprot sp|Q96MT1|RN145_HUMAN 28 71 + 44 Gaps:3 6.18 663 46.34 4e-06 RING finger protein 145 OS Homo sapiens GN RNF145 PE 2 SV 2
blastp_uniprot_sprot sp|Q5SWK7|RN145_MOUSE 28 72 + 45 Gaps:3 6.33 663 45.24 6e-06 RING finger protein 145 OS Mus musculus GN Rnf145 PE 2 SV 1
blastp_uniprot_sprot sp|Q5EAE9|ATL43_ARATH 25 145 + 121 Gaps:25 30.96 407 33.33 1e-05 RING-H2 finger protein ATL43 OS Arabidopsis thaliana GN ATL43 PE 2 SV 2
rpsblast_cdd gnl|CDD|205816 26 71 + 46 none 100.00 46 39.13 4e-09 pfam13639 zf-RING_2 Ring finger domain.
rpsblast_cdd gnl|CDD|206094 27 70 + 44 Gaps:2 93.33 45 42.86 6e-07 pfam13923 zf-C3HC4_2 Zinc finger C3HC4 type (RING finger).
rpsblast_kog gnl|CDD|39631 19 270 + 252 Gaps:29 46.47 553 15.18 2e-13 KOG4430 KOG4430 KOG4430 Topoisomerase I-binding arginine-serine-rich protein [Transcription].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 27 68 42 PF13639 none Ring finger domain IPR001841
ProSiteProfiles 28 69 42 PS50089 none Zinc finger RING-type profile. IPR001841
SMART 28 68 41 SM00184 none Ring finger IPR001841
SUPERFAMILY 22 75 54 SSF57850 none none none
PANTHER 28 289 262 PTHR12456:SF9 none none none
Gene3D 26 72 47 G3DSA:3.30.40.10 none none IPR013083
PANTHER 28 289 262 PTHR12456 none none none
Pfam 199 269 71 PF01480 none PWI domain IPR002483
Gene3D 191 269 79 G3DSA:1.20.1390.10 none none IPR002483
ProSitePatterns 46 55 10 PS00518 none Zinc finger RING-type signature. IPR017907

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting