Protein : Qrob_P0157160.2 Q. robur
Protein Identifier  ? Qrob_P0157160.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) PF00560//PF08263//PF13504 - Leucine Rich Repeat // Leucine rich repeat N-terminal domain // Leucine rich repeat Gene Prediction Quality  validated
Protein length 

Sequence

Length: 378  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0741280 15 374 + 360 Gaps:110 98.53 477 50.21 5e-137 serine-threonine protein kinase plant-type putative (EC:1.3.1.74)
blastp_kegg lcl|fve:101305229 27 376 + 350 Gaps:117 95.82 479 50.54 4e-131 probable LRR receptor-like serine/threonine-protein kinase At4g08850-like
blastp_kegg lcl|tcc:TCM_015299 1 374 + 374 Gaps:117 99.79 480 48.02 1e-124 Leucine-rich repeat (LRR) family protein
blastp_kegg lcl|pper:PRUPE_ppa005241mg 15 374 + 360 Gaps:114 99.36 471 49.57 2e-123 hypothetical protein
blastp_kegg lcl|pmum:103336480 15 374 + 360 Gaps:114 93.41 501 48.93 6e-122 probable LRR receptor-like serine/threonine-protein kinase At4g08850
blastp_kegg lcl|pop:POPTR_0013s10590g 27 374 + 348 Gaps:97 95.37 454 50.12 1e-119 disease resistance family protein
blastp_kegg lcl|vvi:100261979 28 374 + 347 Gaps:110 94.62 483 47.70 1e-118 probable LRR receptor-like serine/threonine-protein kinase At4g08850-like
blastp_kegg lcl|mdm:103425102 17 374 + 358 Gaps:114 93.01 501 49.14 6e-118 probably inactive leucine-rich repeat receptor-like protein kinase At2g25790
blastp_kegg lcl|pxb:103956564 17 374 + 358 Gaps:114 98.94 471 48.50 3e-117 probably inactive leucine-rich repeat receptor-like protein kinase At2g25790
blastp_kegg lcl|csv:101230231 33 374 + 342 Gaps:116 95.97 471 46.24 7e-113 probably inactive leucine-rich repeat receptor-like protein kinase At2g25790-like
blastp_pdb 1ogq_A 35 373 + 339 Gaps:55 99.04 313 36.45 3e-43 mol:protein length:313 POLYGALACTURONASE INHIBITING PROTEIN
blastp_pdb 3rgz_A 57 376 + 320 Gaps:266 93.88 768 36.06 6e-16 mol:protein length:768 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 3rgx_A 57 376 + 320 Gaps:266 93.88 768 36.06 6e-16 mol:protein length:768 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 3rj0_A 57 376 + 320 Gaps:264 93.39 772 35.78 7e-16 mol:protein length:772 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_pdb 3riz_A 57 376 + 320 Gaps:264 93.39 772 35.78 7e-16 mol:protein length:772 Protein BRASSINOSTEROID INSENSITIVE 1
blastp_uniprot_sprot sp|Q00874|DR100_ARATH 35 370 + 336 Gaps:28 91.94 372 35.09 8e-50 DNA-damage-repair/toleration protein DRT100 OS Arabidopsis thaliana GN DRT100 PE 2 SV 2
blastp_uniprot_sprot sp|A7PW81|PGIP_VITVI 32 374 + 343 Gaps:54 92.19 333 39.09 8e-46 Polygalacturonase inhibitor OS Vitis vinifera GN pgip PE 1 SV 1
blastp_uniprot_sprot sp|P58823|PGIP3_PHAVU 29 373 + 345 Gaps:55 92.40 342 36.71 7e-45 Polygalacturonase inhibitor 3 OS Phaseolus vulgaris GN PGIP3 PE 1 SV 1
blastp_uniprot_sprot sp|P58822|PGIP2_PHAVU 29 373 + 345 Gaps:55 92.40 342 36.39 3e-43 Polygalacturonase inhibitor 2 OS Phaseolus vulgaris GN PGIP2 PE 1 SV 1
blastp_uniprot_sprot sp|P35334|PGIP1_PHAVU 29 373 + 345 Gaps:55 92.40 342 36.08 4e-43 Polygalacturonase inhibitor 1 OS Phaseolus vulgaris GN PGIP1 PE 1 SV 1
blastp_uniprot_sprot sp|Q05091|PGIP_PYRCO 10 374 + 365 Gaps:58 98.48 330 37.54 2e-41 Polygalacturonase inhibitor OS Pyrus communis GN PGIP PE 1 SV 1
blastp_uniprot_sprot sp|Q9M5J8|PGIP2_ARATH 35 374 + 340 Gaps:52 92.73 330 38.24 1e-38 Polygalacturonase inhibitor 2 OS Arabidopsis thaliana GN PGIP2 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M5J9|PGIP1_ARATH 35 374 + 340 Gaps:54 92.73 330 36.60 1e-38 Polygalacturonase inhibitor 1 OS Arabidopsis thaliana GN PGIP1 PE 2 SV 1
blastp_uniprot_sprot sp|O82318|Y2579_ARATH 20 376 + 357 Gaps:146 63.96 960 43.49 1e-32 Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS Arabidopsis thaliana GN At2g25790 PE 1 SV 1
blastp_uniprot_sprot sp|Q8GT95|PGIP1_ORYSJ 35 374 + 340 Gaps:56 91.57 332 34.54 1e-31 Polygalacturonase inhibitor 1 OS Oryza sativa subsp. japonica GN FOR1 PE 2 SV 1
rpsblast_cdd gnl|CDD|177728 7 376 + 370 Gaps:158 63.84 968 43.53 1e-39 PLN00113 PLN00113 leucine-rich repeat receptor-like protein kinase Provisional.
rpsblast_cdd gnl|CDD|178695 110 257 + 148 Gaps:11 16.85 623 54.29 1e-09 PLN03150 PLN03150 hypothetical protein Provisional.
rpsblast_cdd gnl|CDD|203890 38 75 + 38 Gaps:1 92.86 42 58.97 9e-08 pfam08263 LRRNT_2 Leucine rich repeat N-terminal domain. Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats.
rpsblast_kog gnl|CDD|39857 191 362 + 172 Gaps:6 18.90 889 29.17 3e-13 KOG4658 KOG4658 KOG4658 Apoptotic ATPase [Signal transduction mechanisms].
rpsblast_kog gnl|CDD|35838 104 354 + 251 Gaps:170 40.24 1081 35.40 2e-11 KOG0618 KOG0618 KOG0618 Serine/threonine phosphatase 2C containing leucine-rich repeats similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms].

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 371 371 PTHR24420 none none none
Phobius 1 27 27 SIGNAL_PEPTIDE none Signal peptide region none
Pfam 313 327 15 PF13504 none Leucine rich repeat IPR001611
Pfam 165 186 22 PF00560 none Leucine Rich Repeat IPR001611
Pfam 334 355 22 PF00560 none Leucine Rich Repeat IPR001611
Pfam 213 234 22 PF00560 none Leucine Rich Repeat IPR001611
Phobius 1 11 11 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
SUPERFAMILY 34 277 244 SSF52058 none none none
SUPERFAMILY 306 371 66 SSF52058 none none none
Gene3D 147 370 224 G3DSA:3.80.10.10 none none none
Gene3D 34 146 113 G3DSA:3.80.10.10 none none none
Phobius 24 27 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Pfam 38 75 38 PF08263 none Leucine rich repeat N-terminal domain IPR013210
Phobius 12 23 12 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 28 377 350 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

2 Localization

Analysis Start End Length
SignalP_EUK 1 27 26
TMHMM 12 34 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL8_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BXT7R_864 29.91 0 47,18 lod 7.0997 0.044
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 33   Secretory pathway 1 0.979 0.007 NON-PLANT 33