Protein : Qrob_P0157030.2 Q. robur
Protein Identifier  ? Qrob_P0157030.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K12831 - splicing factor 3B subunit 4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 195  
Kegg Orthology  K12831
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103444508 1 194 + 194 Gaps:6 100.00 192 75.00 4e-91 splicing factor 3B subunit 4
blastp_kegg lcl|vvi:100244774 1 194 + 194 Gaps:2 100.00 194 70.62 3e-89 33 kDa ribonucleoprotein chloroplastic-like
blastp_kegg lcl|pmum:103336475 1 194 + 194 Gaps:2 100.00 196 69.90 8e-89 splicing factor 3B subunit 4
blastp_kegg lcl|pper:PRUPE_ppa011785mg 1 194 + 194 Gaps:2 100.00 196 68.88 7e-87 hypothetical protein
blastp_kegg lcl|fve:101306392 1 194 + 194 Gaps:5 100.00 195 70.26 4e-86 uncharacterized protein LOC101306392
blastp_kegg lcl|tcc:TCM_017030 1 194 + 194 Gaps:3 100.00 197 68.53 8e-86 RNA recognition motif-containing protein isoform 1
blastp_kegg lcl|pvu:PHAVU_007G091200g 1 194 + 194 Gaps:4 100.00 196 68.37 4e-85 hypothetical protein
blastp_kegg lcl|sot:102602409 1 194 + 194 Gaps:11 100.00 205 65.85 1e-84 splicing factor 3B subunit 4-like
blastp_kegg lcl|cit:102612062 1 187 + 187 Gaps:9 98.41 189 67.20 8e-80 RNA-binding protein 7-like
blastp_kegg lcl|cic:CICLE_v10022415mg 1 190 + 190 Gaps:9 100.00 189 66.14 3e-78 hypothetical protein
blastp_pdb 1x5u_A 4 80 + 77 Gaps:1 72.38 105 40.79 2e-16 mol:protein length:105 Splicing factor 3B subunit 4 (Spliceosome ass
blastp_pdb 2ywk_A 4 79 + 76 Gaps:2 77.89 95 39.19 2e-11 mol:protein length:95 Putative RNA-binding protein 11
blastp_pdb 2cqb_A 9 80 + 72 Gaps:1 69.61 102 43.66 2e-10 mol:protein length:102 Peptidyl-prolyl cis-trans isomerase E
blastp_pdb 3mdf_B 9 65 + 57 none 67.06 85 49.12 4e-10 mol:protein length:85 Peptidyl-prolyl cis-trans isomerase E
blastp_pdb 3mdf_A 9 65 + 57 none 67.06 85 49.12 4e-10 mol:protein length:85 Peptidyl-prolyl cis-trans isomerase E
blastp_pdb 2kyx_A 9 65 + 57 none 68.67 83 49.12 4e-10 mol:protein length:83 Peptidyl-prolyl cis-trans isomerase E
blastp_pdb 2ku7_A 9 84 + 76 Gaps:1 53.57 140 41.33 4e-10 mol:protein length:140 MLL1 PHD3-Cyp33 RRM chimeric protein
blastp_pdb 3lpy_B 9 65 + 57 none 72.15 79 49.12 5e-10 mol:protein length:79 Peptidyl-prolyl cis-trans isomerase E
blastp_pdb 3lpy_A 9 65 + 57 none 72.15 79 49.12 5e-10 mol:protein length:79 Peptidyl-prolyl cis-trans isomerase E
blastp_pdb 1p1t_A 9 70 + 62 none 59.62 104 40.32 1e-07 mol:protein length:104 Cleavage stimulation factor 64 kDa subunit
blastp_uniprot_sprot sp|Q09442|SF3B4_CAEEL 4 80 + 77 Gaps:1 19.59 388 40.79 2e-15 Splicing factor 3B subunit 4 OS Caenorhabditis elegans GN sap-49 PE 1 SV 2
blastp_uniprot_sprot sp|Q15427|SF3B4_HUMAN 4 80 + 77 Gaps:1 17.92 424 40.79 3e-15 Splicing factor 3B subunit 4 OS Homo sapiens GN SF3B4 PE 1 SV 1
blastp_uniprot_sprot sp|Q6AYL5|SF3B4_RAT 4 80 + 77 Gaps:1 17.92 424 40.79 5e-15 Splicing factor 3B subunit 4 OS Rattus norvegicus GN Sf3b4 PE 2 SV 1
blastp_uniprot_sprot sp|Q8QZY9|SF3B4_MOUSE 4 80 + 77 Gaps:1 17.92 424 40.79 5e-15 Splicing factor 3B subunit 4 OS Mus musculus GN Sf3b4 PE 2 SV 1
blastp_uniprot_sprot sp|O14102|SAP49_SCHPO 4 88 + 85 Gaps:1 25.07 335 35.71 3e-14 Spliceosome-associated protein 49 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN sap49 PE 3 SV 2
blastp_uniprot_sprot sp|P57052|RBM11_HUMAN 5 119 + 115 Gaps:18 45.91 281 31.01 7e-11 Splicing regulator RBM11 OS Homo sapiens GN RBM11 PE 1 SV 1
blastp_uniprot_sprot sp|Q99181|HSH49_YEAST 2 124 + 123 Gaps:8 56.81 213 32.23 1e-10 Protein HSH49 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN HSH49 PE 1 SV 1
blastp_uniprot_sprot sp|Q9Y580|RBM7_HUMAN 2 83 + 82 Gaps:2 30.08 266 36.25 5e-10 RNA-binding protein 7 OS Homo sapiens GN RBM7 PE 1 SV 1
blastp_uniprot_sprot sp|Q3MHY8|RBM7_BOVIN 2 83 + 82 Gaps:2 30.53 262 35.00 8e-10 RNA-binding protein 7 OS Bos taurus GN RBM7 PE 2 SV 1
blastp_uniprot_sprot sp|Q80YT9|RBM11_MOUSE 4 79 + 76 Gaps:2 31.09 238 36.49 8e-10 Splicing regulator RBM11 OS Mus musculus GN Rbm11 PE 1 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 4 81 78 SSF54928 none none none
ProSiteProfiles 7 86 80 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
Gene3D 4 83 80 G3DSA:3.30.70.330 none none IPR012677
Pfam 9 79 71 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
PANTHER 4 85 82 PTHR24011:SF214 none none none
SMART 8 82 75 SM00360 none RNA recognition motif IPR000504
PANTHER 4 85 82 PTHR24011 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL8_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BXT7R_864 29.91 0 47,18 lod 7.0997 0.044
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting