Protein : Qrob_P0157020.2 Q. robur
Protein Identifier  ? Qrob_P0157020.2 Organism . Name  Quercus robur
Protein Description  (M=1) KOG0444//KOG0472//KOG0532//KOG0617//KOG0618//KOG2120//KOG4194//KOG4658 - Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]. // Leucine-rich repeat protein [Function unknown]. // Leucine-rich repeat (LRR) protein contains calponin homology domain [Cytoskeleton]. // Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]. // Serine/threonine phosphatase 2C containing leucine-rich repeats similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]. // SCF ubiquitin ligase Skp2 component [Posttranslational modification protein turnover chaperones]. // Membrane glycoprotein LIG-1 [Signal transduction mechanisms]. // Apoptotic ATPase [Signal transduction mechanisms]. Alias (in v1)  Qrob_P0757090.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 1222  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0043531 ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
GO:0007165 signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103935009 13 1168 + 1156 Gaps:73 94.19 1239 47.64 0.0 TMV resistance protein N-like
blastp_kegg lcl|mdm:103413472 5 1168 + 1164 Gaps:96 92.45 1272 47.19 0.0 TMV resistance protein N-like
blastp_kegg lcl|vvi:100264833 14 1153 + 1140 Gaps:77 95.13 1233 44.42 0.0 TMV resistance protein N-like
blastp_kegg lcl|cic:CICLE_v10023938mg 28 1201 + 1174 Gaps:86 93.62 1254 45.23 0.0 hypothetical protein
blastp_kegg lcl|pxb:103958003 12 1148 + 1137 Gaps:78 93.43 1232 44.48 0.0 TMV resistance protein N-like
blastp_kegg lcl|vvi:100256761 29 1199 + 1171 Gaps:91 94.56 1250 44.67 0.0 TMV resistance protein N-like
blastp_kegg lcl|cic:CICLE_v10024485mg 27 1027 + 1001 Gaps:55 99.61 1022 48.23 0.0 hypothetical protein
blastp_kegg lcl|pxb:103939877 26 963 + 938 Gaps:52 72.76 1292 48.40 0.0 TMV resistance protein N-like
blastp_kegg lcl|cic:CICLE_v10018572mg 27 1150 + 1124 Gaps:107 93.69 1173 45.86 0.0 hypothetical protein
blastp_kegg lcl|pxb:103939875 26 963 + 938 Gaps:52 56.52 1663 48.40 0.0 TMV resistance protein N-like
blastp_pdb 3ozi_B 13 196 + 184 Gaps:6 89.22 204 47.25 3e-43 mol:protein length:204 L6tr
blastp_pdb 3ozi_A 13 196 + 184 Gaps:6 89.22 204 47.25 3e-43 mol:protein length:204 L6tr
blastp_pdb 3jrn_A 28 192 + 165 Gaps:3 92.05 176 45.06 2e-33 mol:protein length:176 AT1G72930 protein
blastp_uniprot_sprot sp|Q40392|TMVRN_NICGU 26 1034 + 1009 Gaps:100 87.85 1144 39.20 0.0 TMV resistance protein N OS Nicotiana glutinosa GN N PE 1 SV 1
blastp_uniprot_sprot sp|O82500|Y4117_ARATH 9 833 + 825 Gaps:84 73.33 1095 38.23 9e-133 Putative disease resistance protein At4g11170 OS Arabidopsis thaliana GN At4g11170 PE 2 SV 1
blastp_uniprot_sprot sp|O23530|SNC1_ARATH 29 966 + 938 Gaps:198 87.01 1301 43.29 1e-126 Protein SUPPRESSOR OF npr1-1 CONSTITUTIVE 1 OS Arabidopsis thaliana GN SNC1 PE 1 SV 3
blastp_uniprot_sprot sp|Q9SZ67|WRK19_ARATH 28 925 + 898 Gaps:120 41.27 1895 38.24 7e-102 Probable WRKY transcription factor 19 OS Arabidopsis thaliana GN WRKY19 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FH83|WRK52_ARATH 111 833 + 723 Gaps:154 62.03 1288 36.92 5e-83 Probable WRKY transcription factor 52 OS Arabidopsis thaliana GN WRKY52 PE 2 SV 3
blastp_uniprot_sprot sp|Q9FL92|WRK16_ARATH 39 841 + 803 Gaps:125 65.16 1372 32.66 1e-78 Probable WRKY transcription factor 16 OS Arabidopsis thaliana GN WRKY16 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FKN7|DAR4_ARATH 42 833 + 792 Gaps:98 49.47 1613 31.33 4e-70 Protein DA1-related 4 OS Arabidopsis thaliana GN DAR4 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SSN3|TIR_ARATH 28 192 + 165 Gaps:3 92.05 176 45.06 8e-33 Toll/interleukin-1 receptor-like protein OS Arabidopsis thaliana GN TIR PE 1 SV 1
blastp_uniprot_sprot sp|Q9FHE9|P2A08_ARATH 11 193 + 183 Gaps:11 50.28 354 35.96 3e-24 Protein PHLOEM PROTEIN 2-LIKE A8 OS Arabidopsis thaliana GN PP2A8 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SZA7|DRL29_ARATH 228 890 + 663 Gaps:150 70.96 816 31.95 3e-22 Probable disease resistance protein At4g33300 OS Arabidopsis thaliana GN At4g33300 PE 2 SV 3
rpsblast_cdd gnl|CDD|178749 9 1036 + 1028 Gaps:112 86.73 1153 37.60 1e-147 PLN03210 PLN03210 Resistant to P. syringae 6 Provisional.
rpsblast_cdd gnl|CDD|201870 31 163 + 133 Gaps:2 100.00 135 43.70 1e-34 pfam01582 TIR TIR domain. The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88 interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn these associate with various kinases to set off signalling cascades.
rpsblast_cdd gnl|CDD|197607 28 168 + 141 Gaps:5 100.00 140 40.00 2e-29 smart00255 TIR Toll - interleukin 1 - resistance.
rpsblast_cdd gnl|CDD|201512 210 465 + 256 Gaps:20 90.53 285 30.62 8e-28 pfam00931 NB-ARC NB-ARC domain.
rpsblast_cdd gnl|CDD|178736 16 131 + 116 Gaps:9 57.22 187 39.25 5e-14 PLN03194 PLN03194 putative disease resistance protein Provisional.
rpsblast_cdd gnl|CDD|205852 31 130 + 100 Gaps:9 89.22 102 25.27 2e-09 pfam13676 TIR_2 TIR domain. This is a family of bacterial Toll-like receptors.
rpsblast_cdd gnl|CDD|177728 650 915 + 266 Gaps:75 27.89 968 41.11 2e-08 PLN00113 PLN00113 leucine-rich repeat receptor-like protein kinase Provisional.

35 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 772 791 20 PS51450 none Leucine-rich repeat profile. IPR001611
PANTHER 891 965 75 PTHR11017 none none none
PANTHER 1 740 740 PTHR11017 none none none
ProSiteProfiles 743 764 22 PS51450 none Leucine-rich repeat profile. IPR001611
Pfam 224 465 242 PF00931 none NB-ARC domain IPR002182
SUPERFAMILY 434 538 105 SSF46785 none none none
Pfam 886 905 20 PF00560 none Leucine Rich Repeat IPR001611
Pfam 863 882 20 PF00560 none Leucine Rich Repeat IPR001611
Gene3D 858 948 91 G3DSA:3.80.10.10 none none none
Gene3D 603 837 235 G3DSA:3.80.10.10 none none none
PANTHER 773 792 20 PTHR11017:SF146 none none none
PANTHER 891 965 75 PTHR11017:SF146 none none none
PANTHER 1 740 740 PTHR11017:SF146 none none none
Pfam 796 833 38 PF12799 none Leucine Rich repeats (2 copies) IPR025875
ProSiteProfiles 886 907 22 PS51450 none Leucine-rich repeat profile. IPR001611
PANTHER 773 792 20 PTHR11017 none none none
Gene3D 26 145 120 G3DSA:3.40.50.10140 none none IPR000157
Pfam 31 163 133 PF01582 none TIR domain IPR000157
ProSiteProfiles 27 168 142 PS50104 none TIR domain profile. IPR000157
ProSiteProfiles 796 818 23 PS51450 none Leucine-rich repeat profile. IPR001611
Pfam 772 787 16 PF13504 none Leucine rich repeat IPR001611
SUPERFAMILY 567 962 396 SSF52058 none none none
SMART 861 883 23 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 884 907 24 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 794 817 24 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
ProSiteProfiles 863 884 22 PS51450 none Leucine-rich repeat profile. IPR001611
SUPERFAMILY 19 171 153 SSF52200 none none IPR000157
Gene3D 226 345 120 G3DSA:3.40.50.300 none none IPR027417
ProSiteProfiles 651 671 21 PS51450 none Leucine-rich repeat profile. IPR001611
SMART 28 168 141 SM00255 none Toll - interleukin 1 - resistance IPR000157

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL8_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BXT7R_864 29.91 0 47,18 lod 7.0997 0.044
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting