Protein : Qrob_P0156970.2 Q. robur
Protein Identifier  ? Qrob_P0156970.2 Organism . Name  Quercus robur
Score  11.1 Score Type  egn
Protein Description  (M=11) PF00560//PF00931//PF01582//PF07725 - Leucine Rich Repeat // NB-ARC domain // TIR domain // Leucine Rich Repeat Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1248  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0043531 ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
GO:0007165 signal transduction The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103935009 9 1152 + 1144 Gaps:43 92.09 1239 48.64 0.0 TMV resistance protein N-like
blastp_kegg lcl|mdm:103413472 9 1152 + 1144 Gaps:42 89.62 1272 48.33 0.0 TMV resistance protein N-like
blastp_kegg lcl|cic:CICLE_v10023938mg 10 1212 + 1203 Gaps:61 94.90 1254 46.72 0.0 hypothetical protein
blastp_kegg lcl|vvi:100261322 21 1151 + 1131 Gaps:78 91.44 1274 44.89 0.0 TMV resistance protein N-like
blastp_kegg lcl|vvi:100256761 22 1202 + 1181 Gaps:74 94.48 1250 46.15 0.0 TMV resistance protein N-like
blastp_kegg lcl|pxb:103939877 22 960 + 939 Gaps:23 71.83 1292 50.86 0.0 TMV resistance protein N-like
blastp_kegg lcl|pxb:103958003 9 1168 + 1160 Gaps:59 93.91 1232 44.43 0.0 TMV resistance protein N-like
blastp_kegg lcl|cic:CICLE_v10024485mg 22 1032 + 1011 Gaps:36 98.92 1022 49.55 0.0 hypothetical protein
blastp_kegg lcl|cit:102619279 10 1212 + 1203 Gaps:104 99.28 1242 43.71 0.0 TMV resistance protein N-like
blastp_kegg lcl|cit:102620345 22 1152 + 1131 Gaps:50 98.69 1144 46.41 0.0 TMV resistance protein N-like
blastp_pdb 3ozi_B 8 186 + 179 Gaps:9 89.22 204 48.35 5e-40 mol:protein length:204 L6tr
blastp_pdb 3ozi_A 8 186 + 179 Gaps:9 89.22 204 48.35 5e-40 mol:protein length:204 L6tr
blastp_pdb 3jrn_A 15 186 + 172 Gaps:8 95.45 176 44.05 2e-30 mol:protein length:176 AT1G72930 protein
blastp_uniprot_sprot sp|Q40392|TMVRN_NICGU 22 1041 + 1020 Gaps:82 87.59 1144 41.82 0.0 TMV resistance protein N OS Nicotiana glutinosa GN N PE 1 SV 1
blastp_uniprot_sprot sp|O82500|Y4117_ARATH 13 1027 + 1015 Gaps:83 80.91 1095 39.73 1e-149 Putative disease resistance protein At4g11170 OS Arabidopsis thaliana GN At4g11170 PE 2 SV 1
blastp_uniprot_sprot sp|O23530|SNC1_ARATH 14 980 + 967 Gaps:174 86.16 1301 43.53 7e-138 Protein SUPPRESSOR OF npr1-1 CONSTITUTIVE 1 OS Arabidopsis thaliana GN SNC1 PE 1 SV 3
blastp_uniprot_sprot sp|Q9SZ67|WRK19_ARATH 17 940 + 924 Gaps:110 41.58 1895 39.47 5e-118 Probable WRKY transcription factor 19 OS Arabidopsis thaliana GN WRKY19 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FL92|WRK16_ARATH 24 979 + 956 Gaps:149 59.48 1372 40.32 3e-102 Probable WRKY transcription factor 16 OS Arabidopsis thaliana GN WRKY16 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FH83|WRK52_ARATH 29 1009 + 981 Gaps:160 69.18 1288 35.47 4e-96 Probable WRKY transcription factor 52 OS Arabidopsis thaliana GN WRKY52 PE 2 SV 3
blastp_uniprot_sprot sp|Q9FKN7|DAR4_ARATH 13 979 + 967 Gaps:199 52.26 1613 35.59 3e-83 Protein DA1-related 4 OS Arabidopsis thaliana GN DAR4 PE 1 SV 2
blastp_uniprot_sprot sp|Q9SSN3|TIR_ARATH 15 186 + 172 Gaps:8 95.45 176 44.05 8e-30 Toll/interleukin-1 receptor-like protein OS Arabidopsis thaliana GN TIR PE 1 SV 1
blastp_uniprot_sprot sp|Q9LVT1|DRL39_ARATH 221 833 + 613 Gaps:125 92.46 623 27.78 2e-24 Putative disease resistance protein At5g47280 OS Arabidopsis thaliana GN At5g47280 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SZA7|DRL29_ARATH 214 841 + 628 Gaps:120 71.81 816 35.32 4e-21 Probable disease resistance protein At4g33300 OS Arabidopsis thaliana GN At4g33300 PE 2 SV 3
rpsblast_cdd gnl|CDD|178749 11 1185 + 1175 Gaps:131 98.70 1153 36.20 1e-157 PLN03210 PLN03210 Resistant to P. syringae 6 Provisional.
rpsblast_cdd gnl|CDD|201512 214 457 + 244 Gaps:13 88.07 285 32.27 8e-35 pfam00931 NB-ARC NB-ARC domain.
rpsblast_cdd gnl|CDD|201870 24 157 + 134 Gaps:3 100.00 135 43.70 2e-30 pfam01582 TIR TIR domain. The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88 interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn these associate with various kinases to set off signalling cascades.
rpsblast_cdd gnl|CDD|197607 21 162 + 142 Gaps:6 100.00 140 42.14 6e-30 smart00255 TIR Toll - interleukin 1 - resistance.
rpsblast_cdd gnl|CDD|34495 642 947 + 306 Gaps:6 76.65 394 26.49 7e-09 COG4886 COG4886 Leucine-rich repeat (LRR) protein [Function unknown].
rpsblast_cdd gnl|CDD|177728 645 929 + 285 Gaps:14 30.27 968 27.65 2e-07 PLN00113 PLN00113 leucine-rich repeat receptor-like protein kinase Provisional.
rpsblast_kog gnl|CDD|39857 196 942 + 747 Gaps:143 75.25 889 32.29 2e-34 KOG4658 KOG4658 KOG4658 Apoptotic ATPase [Signal transduction mechanisms].

30 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 905 979 75 PTHR11017 none none none
PANTHER 5 757 753 PTHR11017 none none none
Gene3D 870 940 71 G3DSA:3.80.10.10 none none none
SUPERFAMILY 11 165 155 SSF52200 none none IPR000157
Pfam 213 459 247 PF00931 none NB-ARC domain IPR002182
PANTHER 5 757 753 PTHR11017:SF146 none none none
PANTHER 905 979 75 PTHR11017:SF146 none none none
ProSiteProfiles 20 162 143 PS50104 none TIR domain profile. IPR000157
SMART 807 830 24 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 759 783 25 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 898 921 24 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 875 897 23 SM00369 none Leucine-rich repeats, typical (most populated) subfamily IPR003591
SMART 21 162 142 SM00255 none Toll - interleukin 1 - resistance IPR000157
Pfam 621 639 19 PF07725 none Leucine Rich Repeat IPR011713
SUPERFAMILY 562 859 298 SSF52058 none none none
SUPERFAMILY 497 512 16 SSF52058 none none none
SUPERFAMILY 182 451 270 SSF52540 none none IPR027417
SUPERFAMILY 872 960 89 SSF52058 none none none
Gene3D 221 345 125 G3DSA:3.40.50.300 none none IPR027417
Pfam 877 895 19 PF00560 none Leucine Rich Repeat IPR001611
Pfam 761 782 22 PF00560 none Leucine Rich Repeat IPR001611
Pfam 785 806 22 PF00560 none Leucine Rich Repeat IPR001611
SMART 220 358 139 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Pfam 24 157 134 PF01582 none TIR domain IPR000157
Gene3D 19 156 138 G3DSA:3.40.50.10140 none none IPR000157
Gene3D 559 855 297 G3DSA:3.80.10.10 none none none
PRINTS 392 406 15 PR00364 none Disease resistance protein signature none
PRINTS 223 238 16 PR00364 none Disease resistance protein signature none
PRINTS 299 313 15 PR00364 none Disease resistance protein signature none
PRINTS 781 797 17 PR00364 none Disease resistance protein signature none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL8_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BXT7R_864 29.91 0 47,18 lod 7.0997 0.044
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting