Protein : Qrob_P0156380.2 Q. robur
Protein Identifier  ? Qrob_P0156380.2 Organism . Name  Quercus robur
Score  67.5 Score Type  egn
Protein Description  (M=1) PTHR31384:SF8 - AUXIN RESPONSE FACTOR 2 (PTHR31384:SF8) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 459  
Kegg Orthology  K14486
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0009725 response to hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103946402 1 362 + 362 Gaps:13 54.51 677 85.64 0.0 auxin response factor 1
blastp_kegg lcl|mdm:103441991 1 362 + 362 Gaps:13 54.51 677 85.09 0.0 auxin response factor 1
blastp_kegg lcl|pper:PRUPE_ppa002394mg 1 362 + 362 Gaps:13 54.42 678 85.64 0.0 hypothetical protein
blastp_kegg lcl|mtr:MTR_2g005240 5 369 + 365 Gaps:12 53.50 671 87.19 0.0 Auxin response factor
blastp_kegg lcl|pmum:103318956 1 362 + 362 Gaps:13 54.42 678 84.82 0.0 auxin response factor 1
blastp_kegg lcl|fve:101310999 1 350 + 350 Gaps:14 52.74 675 87.08 0.0 auxin response factor 1-like
blastp_kegg lcl|cam:101492112 5 369 + 365 Gaps:11 53.43 670 85.75 0.0 auxin response factor 1-like
blastp_kegg lcl|pop:POPTR_0004s23770g 1 435 + 435 Gaps:10 65.41 662 74.13 0.0 auxin response factor 1 family protein
blastp_kegg lcl|pvu:PHAVU_006G221500g 16 369 + 354 Gaps:11 52.26 664 88.47 0.0 hypothetical protein
blastp_kegg lcl|gmx:100793224 16 369 + 354 Gaps:11 52.18 665 88.47 0.0 auxin response factor 1-like
blastp_pdb 1wid_A 127 245 + 119 Gaps:3 89.23 130 31.03 3e-06 mol:protein length:130 DNA-binding protein RAV1
blastp_uniprot_sprot sp|Q8L7G0|ARFA_ARATH 3 338 + 336 Gaps:4 49.92 665 84.94 0.0 Auxin response factor 1 OS Arabidopsis thaliana GN ARF1 PE 1 SV 2
blastp_uniprot_sprot sp|Q6YVY0|ARFG_ORYSJ 20 350 + 331 Gaps:13 49.85 678 78.40 0.0 Auxin response factor 7 OS Oryza sativa subsp. japonica GN ARF7 PE 2 SV 1
blastp_uniprot_sprot sp|Q0JCZ4|ARFI_ORYSJ 11 399 + 389 Gaps:32 61.66 673 66.75 0.0 Auxin response factor 9 OS Oryza sativa subsp. japonica GN ARF9 PE 2 SV 1
blastp_uniprot_sprot sp|Q94JM3|ARFB_ARATH 4 338 + 335 Gaps:4 38.77 859 71.77 1e-168 Auxin response factor 2 OS Arabidopsis thaliana GN ARF2 PE 1 SV 2
blastp_uniprot_sprot sp|Q2R3F5|ARFW_ORYSJ 22 338 + 317 Gaps:9 37.51 853 70.00 2e-154 Auxin response factor 23 OS Oryza sativa subsp. japonica GN ARF23 PE 1 SV 2
blastp_uniprot_sprot sp|A2ZET6|ARFW_ORYSI 22 338 + 317 Gaps:9 37.51 853 69.69 2e-153 Auxin response factor 23 OS Oryza sativa subsp. indica GN ARF23 PE 2 SV 1
blastp_uniprot_sprot sp|Q5JK20|ARFD_ORYSJ 20 350 + 331 Gaps:17 42.08 808 68.24 2e-153 Auxin response factor 4 OS Oryza sativa subsp. japonica GN ARF4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZPY6|ARFK_ARATH 16 338 + 323 Gaps:7 51.13 622 70.44 2e-152 Auxin response factor 11 OS Arabidopsis thaliana GN ARF11 PE 2 SV 3
blastp_uniprot_sprot sp|Q9C5W9|ARFR_ARATH 1 338 + 338 Gaps:7 55.32 602 68.17 2e-150 Auxin response factor 18 OS Arabidopsis thaliana GN ARF18 PE 2 SV 1
blastp_uniprot_sprot sp|Q2QQX6|ARFX_ORYSJ 20 365 + 346 Gaps:22 43.04 841 64.64 9e-150 Auxin response factor 24 OS Oryza sativa subsp. japonica GN ARF24 PE 2 SV 1
rpsblast_cdd gnl|CDD|191545 256 338 + 83 none 100.00 83 56.63 1e-33 pfam06507 Auxin_resp Auxin response factor. A conserved region of auxin-responsive transcription factors.
rpsblast_cdd gnl|CDD|202217 127 230 + 104 Gaps:9 97.94 97 36.84 1e-21 pfam02362 B3 B3 DNA binding domain. This is a family of plant transcription factors with various roles in development the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by.
rpsblast_cdd gnl|CDD|198087 127 230 + 104 Gaps:9 98.96 96 40.00 8e-20 smart01019 B3 B3 DNA binding domain. Two DNA binding proteins RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors while the C-terminal region exhibits homology to the highly conserved C-terminal domain designated B3 of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs respectively and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations.
rpsblast_cdd gnl|CDD|197383 125 230 + 106 Gaps:8 100.00 98 31.63 5e-16 cd10017 B3_DNA Plant-specific B3-DNA binding domain. The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development while other members of the LAV family seem to have a more general role being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain they activate or repress transcription. RAV and REM families are less studied B3 protein famillies.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 338 338 PTHR31384 none none none
PANTHER 1 338 338 PTHR31384:SF8 none none none
Pfam 127 230 104 PF02362 none B3 DNA binding domain IPR003340
SUPERFAMILY 118 259 142 SSF101936 none none IPR015300
Pfam 256 338 83 PF06507 none Auxin response factor IPR010525
SMART 127 232 106 SM01019 none B3 DNA binding domain IPR003340
Gene3D 123 245 123 G3DSA:2.40.330.10 none none IPR015300
ProSiteProfiles 127 232 106 PS50863 none B3 DNA-binding domain profile. IPR003340

0 Localization

0 Qtllist

0 Targeting