Protein : Qrob_P0156220.2 Q. robur
Protein Identifier  ? Qrob_P0156220.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR11206:SF85 - PROTEIN TRANSPARENT TESTA 12 (PTHR11206:SF85) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 506  
Kegg Orthology  K03327
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006855 drug transmembrane transport The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
GO:0015238 drug transmembrane transporter activity Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
GO:0015297 antiporter activity Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out).
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_001905 2 505 + 504 Gaps:1 90.96 553 83.30 0.0 TT12-2 MATE transporter
blastp_kegg lcl|pxb:103947394 1 505 + 505 none 100.00 505 80.99 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|fve:101296537 1 502 + 502 none 99.21 506 81.27 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|mdm:103405133 1 500 + 500 none 97.28 514 80.40 0.0 TT12 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|cam:101513987 6 504 + 499 none 98.81 505 80.56 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|vvi:100250616 5 505 + 501 none 99.40 504 83.23 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|pxb:103965548 1 505 + 505 none 100.00 505 79.60 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|cic:CICLE_v10018340mg 8 500 + 493 none 97.62 505 83.16 0.0 hypothetical protein
blastp_kegg lcl|cit:102613707 8 500 + 493 none 97.62 505 82.56 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|mdm:103443147 1 505 + 505 none 100.00 505 81.19 0.0 TT12 protein TRANSPARENT TESTA 12-like
blastp_pdb 3mku_B 49 491 + 443 Gaps:22 96.74 460 22.70 6e-18 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mku_A 49 491 + 443 Gaps:22 96.74 460 22.70 6e-18 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_B 49 491 + 443 Gaps:22 96.74 460 22.70 6e-18 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_A 49 491 + 443 Gaps:22 96.74 460 22.70 6e-18 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_uniprot_sprot sp|Q9LYT3|TT12_ARATH 1 497 + 497 Gaps:2 98.42 507 72.75 0.0 Protein TRANSPARENT TESTA 12 OS Arabidopsis thaliana GN TT12 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA5|DTX1_ARATH 36 498 + 463 Gaps:14 97.27 476 36.29 8e-88 MATE efflux family protein DTX1 OS Arabidopsis thaliana GN DTX1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA3|MATE6_ARATH 29 495 + 467 Gaps:4 98.95 476 35.67 6e-86 MATE efflux family protein 6 OS Arabidopsis thaliana GN DTXL2 PE 3 SV 2
blastp_uniprot_sprot sp|Q8RWF5|MATE9_ARATH 63 490 + 428 Gaps:2 88.61 483 37.38 5e-83 MATE efflux family protein 9 OS Arabidopsis thaliana GN DTXL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA4|MATE5_ARATH 29 498 + 470 Gaps:4 99.58 476 36.08 2e-82 MATE efflux family protein 5 OS Arabidopsis thaliana GN DTXL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q8GXM8|MATE7_ARATH 63 495 + 433 none 90.97 476 35.10 4e-81 MATE efflux family protein 7 OS Arabidopsis thaliana GN DTXL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA1|MATE8_ARATH 28 490 + 463 Gaps:6 96.23 477 35.29 9e-81 MATE efflux family protein 8 OS Arabidopsis thaliana GN DTXL4 PE 3 SV 2
blastp_uniprot_sprot sp|Q9LUH2|ALF5_ARATH 1 479 + 479 Gaps:18 98.32 477 35.61 9e-80 MATE efflux family protein ALF5 OS Arabidopsis thaliana GN ALF5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LUH3|LAL5_ARATH 49 479 + 431 Gaps:4 91.90 469 35.96 8e-78 MATE efflux family protein LAL5 OS Arabidopsis thaliana GN LAL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q5RFD2|S47A1_PONAB 1 495 + 495 Gaps:28 85.09 570 30.52 3e-52 Multidrug and toxin extrusion protein 1 OS Pongo abelii GN SLC47A1 PE 2 SV 1
rpsblast_cdd gnl|CDD|162043 61 400 + 340 Gaps:10 99.42 342 26.47 3e-48 TIGR00797 matE putative efflux protein MATE family. The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus a putative ethionine resistance protein of Saccharomyces cerevisiae and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
rpsblast_cdd gnl|CDD|30880 49 486 + 438 Gaps:8 96.26 455 25.11 3e-39 COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms].
rpsblast_cdd gnl|CDD|179333 49 479 + 431 Gaps:21 94.74 456 22.45 1e-24 PRK01766 PRK01766 multidrug efflux protein Reviewed.
rpsblast_cdd gnl|CDD|190033 60 443 + 384 Gaps:5 99.38 161 49.38 3e-19 pfam01554 MatE MatE. The MatE domain.
rpsblast_cdd gnl|CDD|166843 79 470 + 392 Gaps:30 86.21 464 24.00 9e-13 PRK00187 PRK00187 multidrug efflux protein NorA Provisional.
rpsblast_kog gnl|CDD|36561 39 498 + 460 Gaps:2 96.83 473 43.01 1e-112 KOG1347 KOG1347 KOG1347 Uncharacterized membrane protein predicted efflux pump [General function prediction only].

30 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 340 350 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 476 505 30 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 273 298 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
TIGRFAM 61 456 396 TIGR00797 "Reactome:REACT_15518","Reactome:REACT_20633" matE: MATE efflux family protein IPR002528
Phobius 299 317 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 424 448 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 202 224 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 418 423 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 318 339 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 90 114 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 60 219 160 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
Pfam 281 442 162 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
PANTHER 5 500 496 PTHR11206 none none none
Phobius 351 375 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 225 229 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 5 500 496 PTHR11206:SF85 none none none
Phobius 135 159 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 51 51 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 191 201 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 71 89 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 52 70 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 115 134 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 395 417 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 376 394 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 230 252 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 171 190 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 160 170 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 454 475 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 449 453 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 253 272 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

10 Localization

Analysis Start End Length
TMHMM 353 375 22
TMHMM 456 475 19
TMHMM 268 290 22
TMHMM 137 159 22
TMHMM 52 74 22
TMHMM 424 446 22
TMHMM 231 253 22
TMHMM 94 116 22
TMHMM 202 224 22
TMHMM 395 417 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8

0 Targeting