Protein : Qrob_P0156200.2 Q. robur
Protein Identifier  ? Qrob_P0156200.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR11206:SF85 - PROTEIN TRANSPARENT TESTA 12 (PTHR11206:SF85) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 505  
Kegg Orthology  K03327
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006855 drug transmembrane transport The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
GO:0015238 drug transmembrane transporter activity Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
GO:0015297 antiporter activity Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out).
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_001905 1 504 + 504 Gaps:2 91.50 553 86.76 0.0 TT12-2 MATE transporter
blastp_kegg lcl|pxb:103947394 1 504 + 504 Gaps:1 100.00 505 82.97 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|fve:101296537 1 501 + 501 Gaps:1 99.21 506 82.47 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|cic:CICLE_v10018340mg 1 499 + 499 Gaps:2 99.21 505 84.83 0.0 hypothetical protein
blastp_kegg lcl|vvi:100250616 1 504 + 504 none 100.00 504 85.12 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|cit:102613707 1 499 + 499 Gaps:2 99.21 505 84.03 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|mdm:103405133 1 503 + 503 Gaps:1 98.05 514 80.95 0.0 TT12 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|pxb:103965548 3 504 + 502 none 99.41 505 81.27 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|pxb:103965520 1 503 + 503 Gaps:2 98.63 512 79.80 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|mdm:103405132 7 503 + 497 none 98.42 505 80.89 0.0 protein TRANSPARENT TESTA 12-like
blastp_pdb 3mku_B 48 490 + 443 Gaps:22 96.74 460 22.25 4e-17 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mku_A 48 490 + 443 Gaps:22 96.74 460 22.25 4e-17 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_B 48 490 + 443 Gaps:22 96.74 460 22.25 4e-17 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_A 48 490 + 443 Gaps:22 96.74 460 22.25 4e-17 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_uniprot_sprot sp|Q9LYT3|TT12_ARATH 1 496 + 496 Gaps:3 98.42 507 75.35 0.0 Protein TRANSPARENT TESTA 12 OS Arabidopsis thaliana GN TT12 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA5|DTX1_ARATH 35 495 + 461 Gaps:2 96.85 476 34.71 6e-87 MATE efflux family protein DTX1 OS Arabidopsis thaliana GN DTX1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA3|MATE6_ARATH 28 492 + 465 Gaps:4 98.53 476 35.39 7e-86 MATE efflux family protein 6 OS Arabidopsis thaliana GN DTXL2 PE 3 SV 2
blastp_uniprot_sprot sp|Q9SIA4|MATE5_ARATH 28 495 + 468 Gaps:4 99.16 476 35.38 6e-83 MATE efflux family protein 5 OS Arabidopsis thaliana GN DTXL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LUH2|ALF5_ARATH 48 479 + 432 Gaps:4 90.57 477 35.65 7e-82 MATE efflux family protein ALF5 OS Arabidopsis thaliana GN ALF5 PE 2 SV 1
blastp_uniprot_sprot sp|Q8RWF5|MATE9_ARATH 62 489 + 428 Gaps:2 88.61 483 36.21 1e-81 MATE efflux family protein 9 OS Arabidopsis thaliana GN DTXL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GXM8|MATE7_ARATH 62 489 + 428 none 89.92 476 34.58 2e-81 MATE efflux family protein 7 OS Arabidopsis thaliana GN DTXL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA1|MATE8_ARATH 7 489 + 483 Gaps:16 98.32 477 34.75 3e-80 MATE efflux family protein 8 OS Arabidopsis thaliana GN DTXL4 PE 3 SV 2
blastp_uniprot_sprot sp|Q9LUH3|LAL5_ARATH 60 479 + 420 none 89.55 469 35.24 1e-77 MATE efflux family protein LAL5 OS Arabidopsis thaliana GN LAL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q5RFD2|S47A1_PONAB 48 485 + 438 Gaps:6 76.49 570 30.50 1e-49 Multidrug and toxin extrusion protein 1 OS Pongo abelii GN SLC47A1 PE 2 SV 1
rpsblast_cdd gnl|CDD|162043 60 399 + 340 Gaps:10 99.42 342 26.47 9e-46 TIGR00797 matE putative efflux protein MATE family. The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus a putative ethionine resistance protein of Saccharomyces cerevisiae and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
rpsblast_cdd gnl|CDD|30880 48 486 + 439 Gaps:8 96.48 455 25.51 2e-38 COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms].
rpsblast_cdd gnl|CDD|179333 48 479 + 432 Gaps:39 94.96 456 23.79 6e-23 PRK01766 PRK01766 multidrug efflux protein Reviewed.
rpsblast_cdd gnl|CDD|190033 59 442 + 384 Gaps:5 99.38 161 45.62 1e-18 pfam01554 MatE MatE. The MatE domain.
rpsblast_cdd gnl|CDD|166843 69 461 + 393 Gaps:37 87.50 464 24.14 1e-11 PRK00187 PRK00187 multidrug efflux protein NorA Provisional.
rpsblast_kog gnl|CDD|36561 38 495 + 458 Gaps:2 96.41 473 41.67 1e-112 KOG1347 KOG1347 KOG1347 Uncharacterized membrane protein predicted efflux pump [General function prediction only].

30 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 446 450 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 229 251 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 123 150 28 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 280 441 162 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
Pfam 59 218 160 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
Phobius 201 223 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
TIGRFAM 60 455 396 TIGR00797 "Reactome:REACT_15518","Reactome:REACT_20633" matE: MATE efflux family protein IPR002528
Phobius 190 200 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 291 295 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 6 499 494 PTHR11206 none none none
Phobius 296 318 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 393 416 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 50 50 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 51 76 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 112 122 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 350 373 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 170 189 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 417 422 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 6 499 494 PTHR11206:SF85 none none none
Phobius 151 169 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 272 290 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 88 111 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 252 271 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 475 504 30 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 77 87 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 423 445 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 451 474 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 319 349 31 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 374 392 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 224 228 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

10 Localization

Analysis Start End Length
TMHMM 128 150 22
TMHMM 201 223 22
TMHMM 228 250 22
TMHMM 423 442 19
TMHMM 394 416 22
TMHMM 452 474 22
TMHMM 85 107 22
TMHMM 352 374 22
TMHMM 270 289 19
TMHMM 53 75 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8

0 Targeting