Protein : Qrob_P0156190.2 Q. robur
Protein Identifier  ? Qrob_P0156190.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) PTHR31384:SF3 - AUXIN RESPONSE FACTOR 6 (PTHR31384:SF3) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 598  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0009725 response to hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa001069mg 1 597 + 597 Gaps:19 66.59 919 82.19 0.0 hypothetical protein
blastp_kegg lcl|pmum:103328968 1 597 + 597 Gaps:47 67.58 947 78.59 0.0 auxin response factor 6-like
blastp_kegg lcl|fve:101291073 1 597 + 597 Gaps:35 66.45 915 80.26 0.0 auxin response factor 17-like
blastp_kegg lcl|pvu:PHAVU_008G197600g 1 597 + 597 Gaps:11 66.22 894 78.55 0.0 hypothetical protein
blastp_kegg lcl|cit:102619942 1 597 + 597 Gaps:3 66.59 898 81.44 0.0 auxin response factor 6-like
blastp_kegg lcl|pop:POPTR_0005s22930g 1 597 + 597 Gaps:8 66.48 907 75.95 0.0 POPTRDRAFT_205407 hypothetical protein
blastp_kegg lcl|gmx:100810798 1 597 + 597 Gaps:11 66.29 896 77.78 0.0 auxin response factor 6-like
blastp_kegg lcl|cic:CICLE_v10014200mg 1 597 + 597 Gaps:3 66.59 898 81.10 0.0 hypothetical protein
blastp_kegg lcl|gmx:100809105 1 597 + 597 Gaps:11 66.29 896 78.11 0.0 auxin response factor 6-like
blastp_kegg lcl|tcc:TCM_001906 1 597 + 597 Gaps:56 64.51 1006 73.34 0.0 Auxin response factor 6 isoform 1
blastp_uniprot_sprot sp|Q6H6V4|ARFF_ORYSJ 1 597 + 597 Gaps:29 66.52 908 58.11 0.0 Auxin response factor 6 OS Oryza sativa subsp. japonica GN ARF6 PE 1 SV 1
blastp_uniprot_sprot sp|A2X1A1|ARFF_ORYSI 1 597 + 597 Gaps:29 66.52 908 58.11 0.0 Auxin response factor 6 OS Oryza sativa subsp. indica GN ARF6 PE 3 SV 1
blastp_uniprot_sprot sp|Q653U3|ARFQ_ORYSJ 1 597 + 597 Gaps:44 66.85 917 57.10 0.0 Auxin response factor 17 OS Oryza sativa subsp. japonica GN ARF17 PE 2 SV 1
blastp_uniprot_sprot sp|A2YG67|ARFQ_ORYSI 1 597 + 597 Gaps:44 66.85 917 57.10 0.0 Auxin response factor 17 OS Oryza sativa subsp. indica GN ARF17 PE 3 SV 1
blastp_uniprot_sprot sp|Q2QM84|ARFY_ORYSJ 1 597 + 597 Gaps:56 66.18 899 55.63 6e-167 Auxin response factor 25 OS Oryza sativa subsp. japonica GN ARF25 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FGV1|ARFH_ARATH 1 597 + 597 Gaps:67 66.58 811 52.59 4e-128 Auxin response factor 8 OS Arabidopsis thaliana GN ARF8 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZTX8|ARFF_ARATH 1 250 + 250 Gaps:11 26.42 935 82.59 2e-122 Auxin response factor 6 OS Arabidopsis thaliana GN ARF6 PE 1 SV 2
blastp_uniprot_sprot sp|Q258Y5|ARFL_ORYSI 1 597 + 597 Gaps:24 41.30 816 68.25 7e-87 Auxin response factor 12 OS Oryza sativa subsp. indica GN ARF12 PE 3 SV 1
blastp_uniprot_sprot sp|Q0J951|ARFL_ORYSJ 1 206 + 206 Gaps:7 24.33 818 76.38 7e-87 Auxin response factor 12 OS Oryza sativa subsp. japonica GN ARF12 PE 2 SV 1
blastp_uniprot_sprot sp|A3B9A0|ARFP_ORYSJ 11 597 + 587 Gaps:5 23.32 1055 63.01 4e-52 Auxin response factor 16 OS Oryza sativa subsp. japonica GN ARF16 PE 2 SV 1
rpsblast_cdd gnl|CDD|191545 19 102 + 84 Gaps:1 100.00 83 66.27 5e-38 pfam06507 Auxin_resp Auxin response factor. A conserved region of auxin-responsive transcription factors.
rpsblast_cdd gnl|CDD|202200 501 597 + 97 Gaps:33 69.15 188 26.92 1e-13 pfam02309 AUX_IAA AUX/IAA family. Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.
rpsblast_kog gnl|CDD|38804 182 342 + 161 Gaps:12 7.61 2220 20.71 1e-07 KOG3598 KOG3598 KOG3598 Thyroid hormone receptor-associated protein complex subunit TRAP230 [Transcription].

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 529 597 69 PS51745 none PB1 domain profile. IPR000270
SUPERFAMILY 521 597 77 SSF54277 none none none
PANTHER 1 192 192 PTHR31384 none none none
PANTHER 208 597 390 PTHR31384 none none none
Phobius 13 20 8 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Phobius 1 24 24 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 21 24 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 1 12 12 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 25 597 573 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 1 192 192 PTHR31384:SF3 none none none
PANTHER 208 597 390 PTHR31384:SF3 none none none
Pfam 19 102 84 PF06507 none Auxin response factor IPR010525
Pfam 523 597 75 PF02309 none AUX/IAA family IPR003311

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 24   Secretory pathway 5 0.382 0.255 NON-PLANT 24