Protein : Qrob_P0156090.2 Q. robur
Protein Identifier  ? Qrob_P0156090.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=1) K16189 - phytochrome-interacting factor 4 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 545  
Kegg Orthology  K16189
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cit:102626817 10 530 + 521 Gaps:42 95.80 548 62.48 0.0 transcription factor PIF4-like
blastp_kegg lcl|cic:CICLE_v10031028mg 10 530 + 521 Gaps:45 95.83 551 62.12 0.0 hypothetical protein
blastp_kegg lcl|fve:101293112 3 533 + 531 Gaps:37 99.26 540 61.75 0.0 transcription factor PIF5-like
blastp_kegg lcl|pper:PRUPE_ppa017228mg 10 533 + 524 Gaps:44 98.36 549 62.59 0.0 hypothetical protein
blastp_kegg lcl|mdm:103411497 3 533 + 531 Gaps:46 99.27 551 61.61 0.0 transcription factor PIF4-like
blastp_kegg lcl|pxb:103965596 3 533 + 531 Gaps:36 99.26 541 60.89 0.0 transcription factor PIF4
blastp_kegg lcl|csv:101205993 4 533 + 530 Gaps:60 99.27 550 60.07 0.0 transcription factor PIF5-like
blastp_kegg lcl|tcc:TCM_001913 3 532 + 530 Gaps:51 98.66 524 61.70 3e-178 Phytochrome interacting factor 3-like 6 putative isoform 1
blastp_kegg lcl|vvi:100262490 1 537 + 537 Gaps:44 100.00 531 59.32 4e-178 transcription factor PIF5-like
blastp_kegg lcl|cmo:103502508 4 533 + 530 Gaps:48 99.27 550 59.16 5e-178 transcription factor PIF4-like
blastp_uniprot_sprot sp|Q8W2F3|PIF4_ARATH 9 519 + 511 Gaps:118 97.91 430 45.84 1e-70 Transcription factor PIF4 OS Arabidopsis thaliana GN PIF4 PE 1 SV 1
blastp_uniprot_sprot sp|Q84LH8|PIF5_ARATH 8 521 + 514 Gaps:96 97.97 444 45.29 5e-51 Transcription factor PIF5 OS Arabidopsis thaliana GN PIF5 PE 1 SV 1
blastp_uniprot_sprot sp|Q8GZM7|PIF1_ARATH 24 489 + 466 Gaps:101 86.82 478 38.31 2e-42 Transcription factor PIF1 OS Arabidopsis thaliana GN PIF1 PE 1 SV 1
blastp_uniprot_sprot sp|O80536|PIF3_ARATH 268 412 + 145 Gaps:9 28.63 524 57.33 9e-37 Transcription factor PIF3 OS Arabidopsis thaliana GN PIF3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SVU6|BH023_ARATH 292 441 + 150 Gaps:15 35.11 413 48.97 5e-28 Transcription factor bHLH23 OS Arabidopsis thaliana GN BHLH23 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L5W8|PIL1_ARATH 283 453 + 171 Gaps:12 41.59 416 39.88 5e-26 Transcription factor PIL1 OS Arabidopsis thaliana GN PIL1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SVU7|BH056_ARATH 313 435 + 123 Gaps:10 27.64 445 50.41 1e-24 Putative transcription factor bHLH056 OS Arabidopsis thaliana GN BHLH56 PE 4 SV 2
blastp_uniprot_sprot sp|Q9FUA4|SPT_ARATH 307 409 + 103 Gaps:6 29.22 373 55.96 1e-24 Transcription factor SPATULA OS Arabidopsis thaliana GN SPT PE 1 SV 1
blastp_uniprot_sprot sp|Q9FHA2|ALC_ARATH 329 409 + 81 Gaps:2 39.52 210 61.45 1e-23 Transcription factor ALC OS Arabidopsis thaliana GN ALC PE 2 SV 1
blastp_uniprot_sprot sp|Q7XHI7|BH127_ARATH 325 494 + 170 Gaps:27 49.84 307 45.75 8e-22 Transcription factor bHLH127 OS Arabidopsis thaliana GN BHLH127 PE 2 SV 1
rpsblast_cdd gnl|CDD|197674 345 393 + 49 Gaps:3 98.11 53 50.00 6e-15 smart00353 HLH helix loop helix domain.
rpsblast_cdd gnl|CDD|200925 342 389 + 48 Gaps:2 96.15 52 52.00 4e-13 pfam00010 HLH Helix-loop-helix DNA-binding domain.
rpsblast_cdd gnl|CDD|28964 342 393 + 52 Gaps:3 91.67 60 49.09 1e-12 cd00083 HLH Helix-loop-helix domain found in specific DNA- binding proteins that act as transcription factors 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region HLH forms homo- and heterodimers dimerization creates a parallel left-handed four helix bundle the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3) those lacking the basic domain (Emc Id) function as negative regulators since they fail to bind DNA those (hairy E(spl) deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3) those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins the binding of small molecules (e.g. dioxin) and interactions with non-PAS proteins..

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 26 172 147 PTHR12565:SF80 none none IPR031066
PANTHER 221 474 254 PTHR12565:SF80 none none IPR031066
SUPERFAMILY 336 403 68 SSF47459 none none IPR011598
ProSiteProfiles 339 388 50 PS50888 none Myc-type, basic helix-loop-helix (bHLH) domain profile. IPR011598
Coils 345 366 22 Coil none none none
Gene3D 336 396 61 G3DSA:4.10.280.10 none none IPR011598
Pfam 343 389 47 PF00010 none Helix-loop-helix DNA-binding domain IPR011598
PANTHER 26 172 147 PTHR12565 none none none
PANTHER 221 474 254 PTHR12565 none none none
SMART 345 394 50 SM00353 none helix loop helix domain IPR011598
Coils 301 322 22 Coil none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8

0 Targeting