Protein : Qrob_P0152910.2 Q. robur
Protein Identifier  ? Qrob_P0152910.2 Organism . Name  Quercus robur
Score  96.1 Score Type  egn
Protein Description  (M=9) PTHR10283:SF21 - ARSENICAL PUMP MEMBRANE PROTEIN Gene Prediction Quality  validated
Protein length 

Sequence

Length: 530  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.

30 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103958238 1 529 + 529 Gaps:18 100.00 547 73.86 0.0 putative transporter arsB
blastp_kegg lcl|mdm:103439788 1 529 + 529 Gaps:18 100.00 547 73.49 0.0 putative transporter arsB
blastp_kegg lcl|cit:102622728 1 529 + 529 Gaps:18 100.00 547 73.86 0.0 putative transporter arsB-like
blastp_kegg lcl|pper:PRUPE_ppa024761mg 1 529 + 529 Gaps:18 100.00 547 74.22 0.0 hypothetical protein
blastp_kegg lcl|mdm:103439785 1 529 + 529 Gaps:18 100.00 547 73.31 0.0 putative transporter arsB
blastp_kegg lcl|fve:101312391 1 529 + 529 Gaps:28 100.00 543 74.22 0.0 putative transporter arsB-like
blastp_kegg lcl|tcc:TCM_015214 1 529 + 529 Gaps:19 100.00 548 73.54 0.0 Divalent ion symporter isoform 1
blastp_kegg lcl|pmum:103333183 1 529 + 529 Gaps:18 100.00 547 73.31 0.0 putative transporter arsB
blastp_kegg lcl|mdm:103410297 1 528 + 528 Gaps:18 99.45 549 71.61 0.0 putative transporter arsB
blastp_kegg lcl|tcc:TCM_015210 1 529 + 529 Gaps:21 100.00 548 72.45 0.0 Divalent ion symporter
blastp_uniprot_sprot sp|Q54GU0|ARSB_DICDI 3 528 + 526 Gaps:36 93.07 563 33.97 4e-73 Putative transporter arsB OS Dictyostelium discoideum GN arsB PE 2 SV 1
blastp_uniprot_sprot sp|Q04671|P_HUMAN 61 528 + 468 Gaps:66 53.22 838 26.68 3e-19 P protein OS Homo sapiens GN OCA2 PE 1 SV 2
blastp_uniprot_sprot sp|Q8MIQ9|P_PIG 8 528 + 521 Gaps:58 59.05 845 25.05 1e-18 P protein OS Sus scrofa GN Oca2 PE 2 SV 3
blastp_uniprot_sprot sp|Q62052|P_MOUSE 61 528 + 468 Gaps:68 53.54 833 27.58 2e-18 P protein OS Mus musculus GN Oca2 PE 1 SV 1
blastp_uniprot_sprot sp|P0A607|Y2703_MYCBO 33 230 + 198 Gaps:9 46.39 429 27.14 3e-14 Uncharacterized transporter Mb2703 OS Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN Mb2703 PE 3 SV 1
blastp_uniprot_sprot sp|P0A606|Y2684_MYCTU 33 230 + 198 Gaps:9 46.39 429 27.14 3e-14 Uncharacterized transporter Rv2684/MT2758 OS Mycobacterium tuberculosis GN Rv2684 PE 3 SV 1
blastp_uniprot_sprot sp|P46838|AG45_MYCLE 14 198 + 185 Gaps:8 44.06 429 28.04 3e-12 46 kDa membrane protein OS Mycobacterium leprae (strain TN) GN ag45 PE 3 SV 2
blastp_uniprot_sprot sp|O07187|Y2685_MYCTU 61 225 + 165 Gaps:11 37.85 428 29.63 4e-11 Uncharacterized transporter Rv2685/MT2759 OS Mycobacterium tuberculosis GN Rv2685 PE 3 SV 1
blastp_uniprot_sprot sp|P75788|YBIR_ECOLI 59 186 + 128 none 34.41 372 28.91 5e-09 Inner membrane protein YbiR OS Escherichia coli (strain K12) GN ybiR PE 1 SV 1
blastp_uniprot_sprot sp|Q57898|Y456_METJA 56 225 + 170 Gaps:14 46.02 352 27.78 1e-06 Uncharacterized transporter MJ0456 OS Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN MJ0456 PE 3 SV 1
rpsblast_cdd gnl|CDD|165704 1 528 + 528 Gaps:55 98.96 482 59.12 1e-154 PLN00136 PLN00136 silicon transporter Provisional.
rpsblast_cdd gnl|CDD|29731 25 528 + 504 Gaps:17 99.22 384 43.31 1e-46 cd01117 YbiR_permease Putative anion permease YbiR. Based on sequence similarity YbiR proteins are predicted to function as anion translocating permeases in eubacteria archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium sulfate arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains..
rpsblast_cdd gnl|CDD|146307 16 477 + 462 Gaps:22 99.73 377 26.06 1e-36 pfam03600 CitMHS Citrate transporter.
rpsblast_cdd gnl|CDD|29728 2 528 + 527 Gaps:21 98.74 396 43.22 2e-30 cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium arsenate antimonite sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump..
rpsblast_cdd gnl|CDD|31255 2 528 + 527 Gaps:26 98.11 424 37.50 2e-25 COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism].
rpsblast_cdd gnl|CDD|29730 8 524 + 517 Gaps:24 100.00 413 37.53 2e-25 cd01116 P_permease Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown it was predicted to regulate the intraorganelle pH together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium arsenate sulfate and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains..
rpsblast_cdd gnl|CDD|130010 14 207 + 194 Gaps:10 46.62 429 23.50 8e-16 TIGR00935 2a45 arsenical pump membrane protein.
rpsblast_cdd gnl|CDD|29732 14 222 + 209 Gaps:10 51.68 416 26.05 1e-13 cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium arsenate sulfate and organic anions across biological membranes in all three kingdoms of life..
rpsblast_cdd gnl|CDD|73247 14 209 + 196 Gaps:10 99.74 382 25.46 6e-12 cd01115 SLC13_permease Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate citrate and alpha-ketoglutarate across plasma membranes rabbit human and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices..
rpsblast_kog gnl|CDD|37850 2 528 + 527 Gaps:50 73.72 685 30.10 1e-107 KOG2639 KOG2639 KOG2639 Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism].

28 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 337 368 32 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 16 477 462 PF03600 none Citrate transporter IPR004680
Phobius 205 336 132 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 34 39 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 7 232 226 PTHR10283 none none none
PANTHER 270 528 259 PTHR10283 none none none
Phobius 369 379 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 102 119 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 491 509 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 184 204 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 467 490 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 120 183 64 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 443 460 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 40 59 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 529 529 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 461 466 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 82 101 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 420 437 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 400 419 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 11 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 380 399 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 510 528 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 65 81 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 60 64 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 7 232 226 PTHR10283:SF21 none none none
PANTHER 270 528 259 PTHR10283:SF21 none none none
Phobius 438 442 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 12 33 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

9 Localization

Analysis Start End Length
TMHMM 505 527 22
TMHMM 58 80 22
TMHMM 380 398 18
TMHMM 177 199 22
TMHMM 425 447 22
TMHMM 10 32 22
TMHMM 337 359 22
TMHMM 468 490 22
TMHMM 37 54 17

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran2_2002_QTL12_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 4,33 33,33 lod 6,5 9,1
Bourran2_2014_nEpis_A4 Qrob_Chr09 9 v_AQ16YP22_198 s_1BM1HR_1387 18,91 18,91 43,71 lod 2,6242 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 26   Secretory pathway 1 0.994 0.019 NON-PLANT 26