Protein : Qrob_P0152770.2 Q. robur
Protein Identifier  ? Qrob_P0152770.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=9) PTHR10283:SF21 - ARSENICAL PUMP MEMBRANE PROTEIN Gene Prediction Quality  validated
Protein length 

Sequence

Length: 289  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.

16 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0017s01780g 1 269 + 269 Gaps:36 81.06 359 45.02 7e-67 hypothetical protein
blastp_kegg lcl|tcc:TCM_015214 1 269 + 269 Gaps:56 58.58 548 54.52 2e-59 Divalent ion symporter isoform 1
blastp_kegg lcl|cit:102622728 1 269 + 269 Gaps:55 58.50 547 55.00 6e-59 putative transporter arsB-like
blastp_kegg lcl|vvi:100243964 1 269 + 269 Gaps:51 58.09 544 52.85 2e-58 putative transporter arsB-like
blastp_kegg lcl|vvi:100259320 1 269 + 269 Gaps:56 58.47 549 52.34 3e-58 putative transporter arsB-like
blastp_kegg lcl|gmx:100781849 1 269 + 269 Gaps:44 57.49 534 57.33 7e-58 putative transporter arsB-like
blastp_kegg lcl|gmx:100818695 1 269 + 269 Gaps:46 57.81 538 52.73 9e-58 putative transporter arsB-like
blastp_kegg lcl|sot:102599999 1 269 + 269 Gaps:48 57.22 533 56.39 1e-57 putative transporter arsB-like
blastp_kegg lcl|cam:101491203 1 269 + 269 Gaps:48 57.96 540 52.40 1e-57 putative transporter arsB-like
blastp_kegg lcl|pvu:PHAVU_007G073000g 1 269 + 269 Gaps:44 57.49 534 55.37 1e-57 hypothetical protein
blastp_uniprot_sprot sp|Q54GU0|ARSB_DICDI 31 132 + 102 Gaps:4 18.83 563 36.79 4e-12 Putative transporter arsB OS Dictyostelium discoideum GN arsB PE 2 SV 1
rpsblast_cdd gnl|CDD|165704 1 269 + 269 none 40.66 482 55.61 4e-44 PLN00136 PLN00136 silicon transporter Provisional.
rpsblast_cdd gnl|CDD|29731 27 128 + 102 none 26.56 384 43.14 9e-19 cd01117 YbiR_permease Putative anion permease YbiR. Based on sequence similarity YbiR proteins are predicted to function as anion translocating permeases in eubacteria archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium sulfate arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains..
rpsblast_cdd gnl|CDD|146307 16 128 + 113 Gaps:8 31.56 377 22.69 6e-15 pfam03600 CitMHS Citrate transporter.
rpsblast_cdd gnl|CDD|29728 30 127 + 98 none 24.75 396 35.71 2e-10 cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium arsenate antimonite sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump..
rpsblast_kog gnl|CDD|37850 9 269 + 261 Gaps:14 40.73 685 25.09 5e-27 KOG2639 KOG2639 KOG2639 Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism].

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 244 260 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 7 128 122 PTHR10283 none none none
Phobius 239 243 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 195 276 82 PF03600 none Citrate transporter IPR004680
Pfam 16 128 113 PF03600 none Citrate transporter IPR004680
Phobius 80 219 140 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 7 128 122 PTHR10283:SF21 none none none
Phobius 1 5 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 261 288 28 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 37 54 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 55 59 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 220 238 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 26 36 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 60 79 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 6 25 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

5 Localization

Analysis Start End Length
TMHMM 243 260 17
TMHMM 220 239 19
TMHMM 4 26 22
TMHMM 31 53 22
TMHMM 63 80 17

11 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran2_2002_QTL12_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 4,33 33,33 lod 6,5 9,1
Bourran2_2014_nEpis_A4 Qrob_Chr09 9 v_AQ16YP22_198 s_1BM1HR_1387 18,91 18,91 43,71 lod 2,6242 5,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 26   Secretory pathway 1 0.993 0.026 NON-PLANT 26