Protein : Qrob_P0152360.2 Q. robur

Protein Identifier  ? Qrob_P0152360.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR12172 - CELL CYCLE CHECKPOINT PROTEIN RAD17 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1207  

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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0007049 cell cycle The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_035100 1 1199 + 1199 Gaps:64 99.92 1234 51.91 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein putative
blastp_kegg lcl|pxb:103953161 26 1198 + 1173 Gaps:98 98.74 1192 53.61 0.0 uncharacterized LOC103953161
blastp_kegg lcl|mdm:103424490 21 1199 + 1179 Gaps:93 99.25 1193 52.03 0.0 uncharacterized LOC103424490
blastp_kegg lcl|pmum:103319919 33 1198 + 1166 Gaps:120 98.05 1177 54.25 0.0 uncharacterized LOC103319919
blastp_kegg lcl|fve:101299354 22 1201 + 1180 Gaps:106 99.67 1204 50.17 0.0 uncharacterized protein LOC101299354
blastp_kegg lcl|cic:CICLE_v10000067mg 11 1206 + 1196 Gaps:68 99.67 1204 49.42 0.0 hypothetical protein
blastp_kegg lcl|cit:102625992 1 1181 + 1181 Gaps:79 100.00 1174 50.17 0.0 uncharacterized LOC102625992
blastp_kegg lcl|cam:101491991 10 1199 + 1190 Gaps:87 98.94 1232 47.74 0.0 uncharacterized LOC101491991
blastp_kegg lcl|pper:PRUPE_ppa024100mg 15 1198 + 1184 Gaps:76 98.99 1087 56.41 0.0 hypothetical protein
blastp_kegg lcl|cmo:103487579 10 1192 + 1183 Gaps:76 99.00 1205 47.44 0.0 uncharacterized LOC103487579
blastp_pdb 1sxj_A 305 599 + 295 Gaps:77 43.02 516 32.88 1e-15 mol:protein length:516 Activator 1 95 kDa subunit
blastp_uniprot_sprot sp|Q4QY64|ATAD5_MOUSE 298 607 + 310 Gaps:57 19.88 1826 30.03 2e-36 ATPase family AAA domain-containing protein 5 OS Mus musculus GN Atad5 PE 1 SV 1
blastp_uniprot_sprot sp|Q96QE3|ATAD5_HUMAN 298 608 + 311 Gaps:64 19.58 1844 31.58 3e-34 ATPase family AAA domain-containing protein 5 OS Homo sapiens GN ATAD5 PE 1 SV 4
blastp_uniprot_sprot sp|P38630|RFC1_YEAST 302 599 + 298 Gaps:77 26.13 861 32.89 5e-16 Replication factor C subunit 1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RFC1 PE 1 SV 1
blastp_uniprot_sprot sp|O43086|ELG1_SCHPO 301 605 + 305 Gaps:107 30.00 920 27.90 3e-12 Telomere length regulation protein elg1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN elg1 PE 1 SV 1
blastp_uniprot_sprot sp|P49956|CTF18_YEAST 303 424 + 122 Gaps:12 15.38 741 34.21 5e-12 Chromosome transmission fidelity protein 18 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN CTF18 PE 1 SV 1
blastp_uniprot_sprot sp|P0C1D3|CTF18_EMENI 300 424 + 125 Gaps:14 11.38 993 37.17 2e-11 Chromosome transmission fidelity protein 18 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN ctf18 PE 3 SV 1
blastp_uniprot_sprot sp|O60182|RFC1_SCHPO 305 434 + 130 Gaps:22 11.78 934 36.36 1e-10 Replication factor C subunit 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rfc1 PE 1 SV 1
blastp_uniprot_sprot sp|P35251|RFC1_HUMAN 298 606 + 309 Gaps:78 21.34 1148 30.61 2e-10 Replication factor C subunit 1 OS Homo sapiens GN RFC1 PE 1 SV 4
blastp_uniprot_sprot sp|Q2R2B4|RFC1_ORYSJ 306 604 + 299 Gaps:72 22.82 1021 28.33 3e-10 Replication factor C subunit 1 OS Oryza sativa subsp. japonica GN RFC1 PE 2 SV 2
blastp_uniprot_sprot sp|Q9C587|RFC1_ARATH 301 604 + 304 Gaps:89 25.00 956 30.96 2e-08 Replication factor C subunit 1 OS Arabidopsis thaliana GN RFC1 PE 2 SV 1
rpsblast_kog gnl|CDD|37179 31 654 + 624 Gaps:130 66.82 871 21.48 4e-35 KOG1968 KOG1968 KOG1968 Replication factor C subunit RFC1 (large subunit) [Replication recombination and repair].
rpsblast_kog gnl|CDD|37180 305 424 + 120 Gaps:3 13.34 877 28.21 6e-10 KOG1969 KOG1969 KOG1969 DNA replication checkpoint protein CHL12/CTF18 [Energy production and conversion Replication recombination and repair].

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 502 558 57 G3DSA:3.40.50.300 none none IPR027417
Gene3D 304 441 138 G3DSA:3.40.50.300 none none IPR027417
PANTHER 496 1023 528 PTHR12172 none none IPR004582
PANTHER 496 1023 528 PTHR12172:SF1 none none none
Pfam 377 420 44 PF00004 none ATPase family associated with various cellular activities (AAA) IPR003959
SUPERFAMILY 503 613 111 SSF52540 none none IPR027417
SUPERFAMILY 304 434 131 SSF52540 none none IPR027417
PANTHER 372 450 79 PTHR12172 none none IPR004582
PANTHER 372 450 79 PTHR12172:SF1 none none none
PANTHER 23 343 321 PTHR12172:SF1 none none none
Gene3D 570 607 38 G3DSA:1.10.8.60 none none none
Coils 662 683 22 Coil none none none
PANTHER 23 343 321 PTHR12172 none none IPR004582

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting