Protein : Qrob_P0151220.2 Q. robur
Protein Identifier  ? Qrob_P0151220.2 Organism . Name  Quercus robur
Score  99.1 Score Type  egn
Protein Description  (M=1) PTHR11669:SF3 - PROTEIN STICHEL-LIKE 2 (PTHR11669:SF3) Code Enzyme  EC:2.7.7.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 752  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006260 DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO:0003887 DNA-directed DNA polymerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
GO:0009360 DNA polymerase III complex The DNA polymerase III holoenzyme is a complex that contains 10 different types of subunits. These subunits are organized into 3 functionally essential sub-assemblies: the pol III core, the beta sliding clamp processivity factor and the clamp-loading complex. The pol III core carries out the polymerase and the 3'-5' exonuclease proofreading activities. The polymerase is tethered to the template via the sliding clamp processivity factor. The clamp-loading complex assembles the beta processivity factor onto the primer template and plays a central role in the organization and communication at the replication fork.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa024514mg 1 750 + 750 Gaps:19 77.74 948 69.88 0.0 hypothetical protein
blastp_kegg lcl|mdm:103455051 1 750 + 750 Gaps:11 72.12 1033 68.46 0.0 protein STICHEL-like 2
blastp_kegg lcl|pxb:103950079 1 750 + 750 Gaps:18 71.93 1026 68.83 0.0 protein STICHEL-like 2
blastp_kegg lcl|pmum:103338201 3 750 + 748 Gaps:38 71.68 1010 70.03 0.0 protein STICHEL-like 2
blastp_kegg lcl|rcu:RCOM_1507690 1 750 + 750 Gaps:21 71.90 1025 68.66 0.0 replication factor C / DNA polymerase III gamma-tau subunit putative (EC:2.7.7.7)
blastp_kegg lcl|tcc:TCM_014535 3 750 + 748 Gaps:12 72.88 1040 66.09 0.0 AAA-type ATPase family protein isoform 1
blastp_kegg lcl|mdm:103437631 3 738 + 736 Gaps:29 71.80 993 68.72 0.0 protein STICHEL-like 2
blastp_kegg lcl|pxb:103926751 3 738 + 736 Gaps:29 69.36 1028 67.32 0.0 protein STICHEL-like 2
blastp_kegg lcl|pop:POPTR_0012s09330g 1 750 + 750 Gaps:16 76.48 965 65.58 0.0 POPTRDRAFT_773119 hypothetical protein
blastp_kegg lcl|cit:102608908 3 750 + 748 Gaps:12 72.69 1018 65.95 0.0 protein STICHEL-like 2-like
blastp_pdb 1xxi_I 303 558 + 256 Gaps:1 69.84 368 33.46 7e-42 mol:protein length:368 DNA polymerase III subunit gamma
blastp_pdb 1xxi_H 303 558 + 256 Gaps:1 69.84 368 33.46 7e-42 mol:protein length:368 DNA polymerase III subunit gamma
blastp_pdb 1xxi_G 303 558 + 256 Gaps:1 69.84 368 33.46 7e-42 mol:protein length:368 DNA polymerase III subunit gamma
blastp_pdb 1xxi_D 303 558 + 256 Gaps:1 69.84 368 33.46 7e-42 mol:protein length:368 DNA polymerase III subunit gamma
blastp_pdb 1xxi_C 303 558 + 256 Gaps:1 69.84 368 33.46 7e-42 mol:protein length:368 DNA polymerase III subunit gamma
blastp_pdb 1xxi_B 303 558 + 256 Gaps:1 69.84 368 33.46 7e-42 mol:protein length:368 DNA polymerase III subunit gamma
blastp_pdb 3glh_N 303 558 + 256 Gaps:1 68.35 376 33.46 7e-42 mol:protein length:376 DNA polymerase III subunit tau
blastp_pdb 3glh_M 303 558 + 256 Gaps:1 68.35 376 33.46 7e-42 mol:protein length:376 DNA polymerase III subunit tau
blastp_pdb 3glh_L 303 558 + 256 Gaps:1 68.35 376 33.46 7e-42 mol:protein length:376 DNA polymerase III subunit tau
blastp_pdb 3glh_I 303 558 + 256 Gaps:1 68.35 376 33.46 7e-42 mol:protein length:376 DNA polymerase III subunit tau
blastp_uniprot_sprot sp|F4JRP8|STIL2_ARATH 1 750 + 750 Gaps:84 78.88 857 59.02 0.0 Protein STICHEL-like 2 OS Arabidopsis thaliana GN At4g24790 PE 2 SV 1
blastp_uniprot_sprot sp|O64728|STI_ARATH 300 655 + 356 Gaps:3 29.47 1218 52.92 4e-108 Protein STICHEL OS Arabidopsis thaliana GN STI PE 1 SV 2
blastp_uniprot_sprot sp|F4HW65|STIL1_ARATH 296 747 + 452 Gaps:40 43.73 1116 43.24 9e-105 Protein STICHEL-like 1 OS Arabidopsis thaliana GN At1g14460 PE 3 SV 1
blastp_uniprot_sprot sp|F4KEM0|STIL4_ARATH 246 750 + 505 Gaps:52 53.11 966 38.99 3e-95 Protein STICHEL-like 4 OS Arabidopsis thaliana GN At5g45720 PE 2 SV 1
blastp_uniprot_sprot sp|F4JRP0|STIL3_ARATH 258 750 + 493 Gaps:30 43.85 1097 40.12 9e-95 Protein STICHEL-like 3 OS Arabidopsis thaliana GN At4g18820 PE 3 SV 1
blastp_uniprot_sprot sp|P09122|DPO3X_BACSU 309 672 + 364 Gaps:7 65.90 563 27.76 2e-46 DNA polymerase III subunit gamma/tau OS Bacillus subtilis (strain 168) GN dnaX PE 3 SV 3
blastp_uniprot_sprot sp|P43746|DPO3X_HAEIN 303 551 + 249 Gaps:1 36.34 688 32.40 3e-41 DNA polymerase III subunit tau/gamma OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN dnaX PE 3 SV 1
blastp_uniprot_sprot sp|Q89A95|DPO3X_BUCBP 305 564 + 260 Gaps:1 70.54 370 31.03 1e-40 DNA polymerase III subunit gamma OS Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN dnaX PE 3 SV 1
blastp_uniprot_sprot sp|P57553|DPO3X_BUCAI 303 652 + 350 Gaps:14 98.61 361 27.25 3e-40 DNA polymerase III subunit gamma OS Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN dnaX PE 3 SV 1
blastp_uniprot_sprot sp|P06710|DPO3X_ECOLI 303 558 + 256 Gaps:1 39.97 643 33.46 4e-40 DNA polymerase III subunit tau OS Escherichia coli (strain K12) GN dnaX PE 1 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 295 603 309 PTHR11669 none none none
Coils 619 640 22 Coil none none none
Gene3D 314 465 152 G3DSA:3.40.50.300 none none IPR027417
PANTHER 620 674 55 PTHR11669 none none none
SMART 336 478 143 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Pfam 537 655 119 PF12169 none DNA polymerase III subunits gamma and tau domain III IPR022754
SUPERFAMILY 541 652 112 SSF48019 "Reactome:REACT_152","Reactome:REACT_1538","Reactome:REACT_216","Reactome:REACT_22172","Reactome:REACT_383" none IPR008921
Pfam 319 477 159 PF13177 none DNA polymerase III, delta subunit none
Gene3D 466 540 75 G3DSA:1.10.8.60 none none none
Gene3D 541 650 110 G3DSA:1.20.272.10 none none none
SUPERFAMILY 305 527 223 SSF52540 none none IPR027417
PANTHER 620 674 55 PTHR11669:SF3 none none none
PANTHER 295 603 309 PTHR11669:SF3 none none none
TIGRFAM 305 650 346 TIGR02397 none dnaX_nterm: DNA polymerase III, subunit gamma and tau IPR012763

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 22   Mitochondrion 4 0.020 0.654 NON-PLANT 22