Protein : Qrob_P0149640.2 Q. robur
Protein Identifier  ? Qrob_P0149640.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=1) K10683 - BRCA1-associated RING domain protein 1 [EC:6.3.2.19] Code Enzyme  EC:6.3.2.19
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1025  
Kegg Orthology  K10683
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0006974 cellular response to DNA damage stimulus Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100256563 1 1024 + 1024 Gaps:60 100.00 1044 56.90 0.0 protein BREAST CANCER SUSCEPTIBILITY 1 homolog
blastp_kegg lcl|mdm:103408982 1 1024 + 1024 Gaps:67 99.81 1039 57.47 0.0 protein BREAST CANCER SUSCEPTIBILITY 1 homolog
blastp_kegg lcl|pmum:103325217 6 1024 + 1019 Gaps:60 99.61 1015 59.05 0.0 protein BREAST CANCER SUSCEPTIBILITY 1 homolog
blastp_kegg lcl|pxb:103952402 1 1024 + 1024 Gaps:62 99.80 1022 57.75 0.0 protein BREAST CANCER SUSCEPTIBILITY 1 homolog
blastp_kegg lcl|cit:102626843 1 1024 + 1024 Gaps:78 100.00 1020 57.16 0.0 protein BREAST CANCER SUSCEPTIBILITY 1 homolog
blastp_kegg lcl|mdm:103435036 1 1024 + 1024 Gaps:68 99.80 1018 58.96 0.0 protein BREAST CANCER SUSCEPTIBILITY 1 homolog
blastp_kegg lcl|cic:CICLE_v10014038mg 1 1024 + 1024 Gaps:88 68.99 1490 56.42 0.0 hypothetical protein
blastp_kegg lcl|pxb:103966068 1 1024 + 1024 Gaps:59 99.80 1025 57.77 0.0 protein BREAST CANCER SUSCEPTIBILITY 1 homolog
blastp_kegg lcl|pper:PRUPE_ppa000720mg 6 1024 + 1019 Gaps:81 99.60 1004 58.60 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0001s36840g 1 1024 + 1024 Gaps:113 97.47 1029 56.03 0.0 POPTRDRAFT_550126 BRCT domain-containing family protein
blastp_pdb 2r1z_B 801 969 + 169 Gaps:21 81.34 209 39.41 5e-22 mol:protein length:209 BRCA1-associated RING domain protein 1
blastp_pdb 2r1z_A 801 969 + 169 Gaps:21 81.34 209 39.41 5e-22 mol:protein length:209 BRCA1-associated RING domain protein 1
blastp_pdb 2nte_B 801 969 + 169 Gaps:21 80.95 210 39.41 5e-22 mol:protein length:210 BRCA1-associated RING domain protein 1
blastp_pdb 2nte_A 801 969 + 169 Gaps:21 80.95 210 39.41 5e-22 mol:protein length:210 BRCA1-associated RING domain protein 1
blastp_pdb 3fa2_B 801 969 + 169 Gaps:21 77.98 218 39.41 5e-22 mol:protein length:218 BRCA1-associated RING domain protein 1
blastp_pdb 3fa2_A 801 969 + 169 Gaps:21 77.98 218 39.41 5e-22 mol:protein length:218 BRCA1-associated RING domain protein 1
blastp_pdb 1n5o_X 799 944 + 146 Gaps:5 67.76 214 29.66 4e-13 mol:protein length:214 Breast cancer type 1 susceptibility protein
blastp_pdb 3k16_A 799 944 + 146 Gaps:5 67.44 215 29.66 6e-13 mol:protein length:215 Breast cancer type 1 susceptibility protein
blastp_pdb 3k15_A 799 944 + 146 Gaps:5 67.44 215 29.66 6e-13 mol:protein length:215 Breast cancer type 1 susceptibility protein
blastp_pdb 1t2u_A 799 944 + 146 Gaps:5 67.76 214 29.66 6e-13 mol:protein length:214 Breast cancer type 1 susceptibility protein
blastp_uniprot_sprot sp|Q8RXD4|BRCA1_ARATH 1 1019 + 1019 Gaps:138 99.57 941 48.56 0.0 Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS Arabidopsis thaliana GN BRCA1 PE 2 SV 1
blastp_uniprot_sprot sp|Q99728|BARD1_HUMAN 801 969 + 169 Gaps:21 21.88 777 39.41 2e-22 BRCA1-associated RING domain protein 1 OS Homo sapiens GN BARD1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9QZH2|BARD1_RAT 801 969 + 169 Gaps:21 22.14 768 36.47 2e-20 BRCA1-associated RING domain protein 1 OS Rattus norvegicus GN Bard1 PE 2 SV 1
blastp_uniprot_sprot sp|O70445|BARD1_MOUSE 801 969 + 169 Gaps:21 22.22 765 35.88 2e-19 BRCA1-associated RING domain protein 1 OS Mus musculus GN Bard1 PE 2 SV 1
blastp_uniprot_sprot sp|Q864U1|BRCA1_BOVIN 8 1022 + 1015 Gaps:32 16.06 1849 30.64 2e-14 Breast cancer type 1 susceptibility protein homolog OS Bos taurus GN BRCA1 PE 1 SV 1
blastp_uniprot_sprot sp|Q95153|BRCA1_CANFA 8 1022 + 1015 Gaps:31 16.13 1878 29.04 7e-14 Breast cancer type 1 susceptibility protein homolog OS Canis familiaris GN BRCA1 PE 3 SV 1
blastp_uniprot_sprot sp|P38398|BRCA1_HUMAN 799 944 + 146 Gaps:5 7.78 1863 29.66 2e-13 Breast cancer type 1 susceptibility protein OS Homo sapiens GN BRCA1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9GKK8|BRCA1_PANTR 799 944 + 146 Gaps:5 7.78 1863 29.66 3e-13 Breast cancer type 1 susceptibility protein homolog OS Pan troglodytes GN BRCA1 PE 2 SV 2
blastp_uniprot_sprot sp|Q6J6J0|BRCA1_PONPY 799 944 + 146 Gaps:5 7.78 1863 29.66 3e-13 Breast cancer type 1 susceptibility protein homolog OS Pongo pygmaeus GN BRCA1 PE 3 SV 1
blastp_uniprot_sprot sp|Q6J6I8|BRCA1_GORGO 799 944 + 146 Gaps:5 7.78 1863 29.66 4e-13 Breast cancer type 1 susceptibility protein homolog OS Gorilla gorilla gorilla GN BRCA1 PE 3 SV 1

20 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 910 1017 108 SM00292 none breast cancer carboxy-terminal domain IPR001357
SMART 793 877 85 SM00292 none breast cancer carboxy-terminal domain IPR001357
ProSiteProfiles 17 55 39 PS50089 none Zinc finger RING-type profile. IPR001841
PANTHER 609 1022 414 PTHR13763:SF0 none none IPR031099
SUPERFAMILY 912 1022 111 SSF52113 none none IPR001357
Pfam 17 54 38 PF13923 none Zinc finger, C3HC4 type (RING finger) none
ProSitePatterns 32 41 10 PS00518 none Zinc finger RING-type signature. IPR017907
Gene3D 909 1017 109 G3DSA:3.40.50.10190 none none IPR001357
ProSiteProfiles 801 887 87 PS50172 none BRCT domain profile. IPR001357
Coils 517 538 22 Coil none none none
Gene3D 799 902 104 G3DSA:3.40.50.10190 none none IPR001357
SUPERFAMILY 801 902 102 SSF52113 none none IPR001357
PANTHER 609 1022 414 PTHR13763 none none none
Pfam 671 749 79 PF13771 none PHD-like zinc-binding domain none
SMART 17 54 38 SM00184 none Ring finger IPR001841
Pfam 909 1014 106 PF00533 none BRCA1 C Terminus (BRCT) domain IPR001357
Pfam 803 874 72 PF00533 none BRCA1 C Terminus (BRCT) domain IPR001357
Gene3D 6 79 74 G3DSA:3.30.40.10 none none IPR013083
SUPERFAMILY 6 78 73 SSF57850 none none none
ProSiteProfiles 908 1014 107 PS50172 none BRCT domain profile. IPR001357

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting