Protein : Qrob_P0139910.2 Q. robur
Protein Identifier  ? Qrob_P0139910.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) 2.1.1.182 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase. Code Enzyme  EC:2.1.1.182
Gene Prediction Quality  validated Protein length 

Sequence

Length: 354  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0006364 rRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
GO:0000154 rRNA modification The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically.
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity Catalysis of the dimethylation two adjacent A residues in the loop closing the 3'-terminal stem of the 18S rRNA, using S-adenosyl-L-methionine as a methyl donor.
GO:0008649 rRNA methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100790726 9 352 + 344 Gaps:19 97.65 341 77.78 7e-179 probable dimethyladenosine transferase-like
blastp_kegg lcl|pmum:103331967 20 353 + 334 Gaps:11 95.54 359 76.38 2e-178 probable dimethyladenosine transferase
blastp_kegg lcl|pper:PRUPE_ppa008000mg 17 353 + 337 Gaps:1 96.28 349 75.60 7e-178 hypothetical protein
blastp_kegg lcl|vvi:100264412 8 352 + 345 Gaps:14 98.81 335 76.74 1e-174 ribosomal RNA small subunit methyltransferase A-like
blastp_kegg lcl|gmx:100780381 9 352 + 344 Gaps:11 97.65 341 75.98 1e-174 probable dimethyladenosine transferase-like
blastp_kegg lcl|pvu:PHAVU_008G070300g 9 352 + 344 Gaps:16 97.66 342 74.85 1e-171 hypothetical protein
blastp_kegg lcl|mdm:103439141 11 352 + 342 Gaps:17 96.39 360 74.06 2e-171 probable dimethyladenosine transferase
blastp_kegg lcl|pop:POPTR_0014s07310g 1 352 + 352 Gaps:22 99.71 339 75.15 3e-171 POPTRDRAFT_244292 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10020970mg 29 353 + 325 Gaps:10 95.45 330 77.78 6e-171 hypothetical protein
blastp_kegg lcl|cit:102623217 29 353 + 325 Gaps:10 95.45 330 77.78 6e-171 probable dimethyladenosine transferase-like
blastp_pdb 3fux_C 67 348 + 282 Gaps:26 95.20 271 33.72 7e-27 mol:protein length:271 Dimethyladenosine transferase
blastp_pdb 3fux_B 67 348 + 282 Gaps:26 95.20 271 33.72 7e-27 mol:protein length:271 Dimethyladenosine transferase
blastp_pdb 3fux_A 67 348 + 282 Gaps:26 95.20 271 33.72 7e-27 mol:protein length:271 Dimethyladenosine transferase
blastp_pdb 3fuw_A 67 348 + 282 Gaps:26 95.20 271 33.72 7e-27 mol:protein length:271 Dimethyladenosine transferase
blastp_pdb 3fuv_C 67 348 + 282 Gaps:26 95.20 271 33.72 7e-27 mol:protein length:271 Dimethyladenosine transferase
blastp_pdb 3fuv_B 67 348 + 282 Gaps:26 95.20 271 33.72 7e-27 mol:protein length:271 Dimethyladenosine transferase
blastp_pdb 3fuv_A 67 348 + 282 Gaps:26 95.20 271 33.72 7e-27 mol:protein length:271 Dimethyladenosine transferase
blastp_pdb 3fuu_A 67 348 + 282 Gaps:26 95.20 271 33.72 7e-27 mol:protein length:271 Dimethyladenosine transferase
blastp_pdb 3fut_B 67 348 + 282 Gaps:26 95.20 271 33.72 7e-27 mol:protein length:271 Dimethyladenosine transferase
blastp_pdb 3fut_A 67 348 + 282 Gaps:26 95.20 271 33.72 7e-27 mol:protein length:271 Dimethyladenosine transferase
blastp_uniprot_sprot sp|Q6ME80|RSMA_PARUW 73 348 + 276 Gaps:12 92.96 284 35.23 2e-48 Ribosomal RNA small subunit methyltransferase A OS Protochlamydia amoebophila (strain UWE25) GN rsmA PE 3 SV 2
blastp_uniprot_sprot sp|Q253R6|RSMA_CHLFF 62 350 + 289 Gaps:23 95.07 284 34.44 2e-39 Ribosomal RNA small subunit methyltransferase A OS Chlamydophila felis (strain Fe/C-56) GN rsmA PE 3 SV 1
blastp_uniprot_sprot sp|Q823V2|RSMA_CHLCV 62 350 + 289 Gaps:23 97.12 278 34.44 2e-38 Ribosomal RNA small subunit methyltransferase A OS Chlamydophila caviae (strain GPIC) GN rsmA PE 3 SV 1
blastp_uniprot_sprot sp|Q2RME8|RSMA_MOOTA 69 346 + 278 Gaps:9 94.79 288 32.97 7e-38 Ribosomal RNA small subunit methyltransferase A OS Moorella thermoacetica (strain ATCC 39073) GN rsmA PE 3 SV 1
blastp_uniprot_sprot sp|Q5L6H5|RSMA_CHLAB 77 350 + 274 Gaps:21 92.45 278 35.80 8e-38 Ribosomal RNA small subunit methyltransferase A OS Chlamydophila abortus (strain DSM 27085 / S26/3) GN rsmA PE 3 SV 1
blastp_uniprot_sprot sp|Q9Z6K0|RSMA_CHLPN 80 348 + 269 Gaps:20 91.34 277 35.18 1e-37 Ribosomal RNA small subunit methyltransferase A OS Chlamydia pneumoniae GN rsmA PE 3 SV 1
blastp_uniprot_sprot sp|Q8YS62|RSMA_NOSS1 80 350 + 271 Gaps:18 97.79 271 34.72 2e-36 Ribosomal RNA small subunit methyltransferase A OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN rsmA PE 3 SV 1
blastp_uniprot_sprot sp|Q9PK40|RSMA_CHLMU 68 350 + 283 Gaps:23 95.31 277 31.44 1e-35 Ribosomal RNA small subunit methyltransferase A OS Chlamydia muridarum (strain MoPn / Nigg) GN rsmA PE 3 SV 1
blastp_uniprot_sprot sp|A9KL97|RSMA_CLOPH 65 350 + 286 Gaps:16 96.55 290 30.71 8e-35 Ribosomal RNA small subunit methyltransferase A OS Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN rsmA PE 3 SV 1
blastp_uniprot_sprot sp|O84358|RSMA_CHLTR 62 350 + 289 Gaps:27 97.47 277 31.48 2e-34 Ribosomal RNA small subunit methyltransferase A OS Chlamydia trachomatis (strain D/UW-3/Cx) GN rsmA PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 110 137 28 PS01131 none Ribosomal RNA adenine dimethylases signature. IPR020596
PANTHER 56 350 295 PTHR11727 none none IPR001737
ProSiteProfiles 80 353 274 PS51689 none rRNA adenine N(6)-methyltransferase family profile. IPR001737
SMART 94 279 186 SM00650 none Ribosomal RNA adenine dimethylases IPR020598
Gene3D 285 351 67 G3DSA:1.10.8.100 none none IPR023165
Pfam 81 350 270 PF00398 none Ribosomal RNA adenine dimethylase IPR001737
Gene3D 65 279 215 G3DSA:3.40.50.150 none none IPR029063
TIGRFAM 80 349 270 TIGR00755 none ksgA: ribosomal RNA small subunit methyltransferase A IPR011530
SUPERFAMILY 78 352 275 SSF53335 none none IPR029063
PANTHER 56 350 295 PTHR11727:SF11 none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 62   Mitochondrion 4 0.068 0.595 NON-PLANT 62