Protein : Qrob_P0138940.2 Q. robur
Protein Identifier  ? Qrob_P0138940.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PF12609//PF13456 - Wound-induced protein // Reverse transcriptase-like Gene Prediction Quality  validated
Protein length 

Sequence

Length: 261  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0004523 RNA-DNA hybrid ribonuclease activity Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.

16 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:102668948 21 177 + 157 none 54.33 289 41.40 5e-27 putative ribonuclease H protein At1g65750-like
blastp_kegg lcl|fve:101315367 12 174 + 163 Gaps:7 80.79 203 37.20 4e-26 uncharacterized protein LOC101315367
blastp_kegg lcl|pmum:103324361 21 174 + 154 Gaps:6 74.51 204 38.82 4e-26 putative ribonuclease H protein At1g65750
blastp_kegg lcl|pmum:103328845 18 173 + 156 Gaps:3 46.55 333 38.06 4e-25 putative ribonuclease H protein At1g65750
blastp_kegg lcl|fve:101292780 21 173 + 153 Gaps:3 35.81 430 38.31 2e-24 uncharacterized protein LOC101292780
blastp_kegg lcl|pper:PRUPE_ppa014857mg 23 172 + 150 Gaps:2 81.97 183 40.00 9e-24 hypothetical protein
blastp_kegg lcl|mdm:103434682 28 173 + 146 Gaps:2 67.92 212 38.89 1e-23 putative ribonuclease H protein At1g65750
blastp_kegg lcl|sly:101264807 11 168 + 158 Gaps:1 16.81 934 35.67 9e-23 uncharacterized LOC101264807
blastp_kegg lcl|tcc:TCM_019529 13 191 + 179 Gaps:3 40.18 438 34.66 1e-22 Non-LTR retroelement reverse transcriptase-like
blastp_kegg lcl|rcu:RCOM_1096450 18 180 + 163 Gaps:2 81.09 201 34.97 2e-22 nuclease putative
blastp_uniprot_sprot sp|P0C2F6|RNHX1_ARATH 22 162 + 141 Gaps:6 23.71 620 33.33 1e-18 Putative ribonuclease H protein At1g65750 OS Arabidopsis thaliana GN At1g65750 PE 3 SV 1
rpsblast_cdd gnl|CDD|187690 36 157 + 122 none 99.19 123 39.34 2e-24 cd06222 RNase_H RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. Ribonuclease H (RNase H) enzymes are divided into two major families Type 1 and Type 2 based on amino acid sequence similarities and biochemical properties. RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner in the presence of divalent cations. RNase H is widely present in various organisms including bacteria archaea and eukaryotes. Most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology Type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site residues and have the same catalytic mechanism and functions in cells. RNase H is involved in DNA replication repair and transcription. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
rpsblast_cdd gnl|CDD|205634 76 160 + 85 none 96.59 88 35.29 4e-20 pfam13456 RVT_3 Reverse transcriptase-like. This domain is found in plants and appears to be part of a retrotransposon.
rpsblast_cdd gnl|CDD|165732 207 257 + 51 none 57.95 88 72.55 3e-16 PLN00165 PLN00165 hypothetical protein Provisional.
rpsblast_cdd gnl|CDD|204977 210 260 + 51 Gaps:1 66.67 78 65.38 3e-13 pfam12609 DUF3774 Wound-induced protein. This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.
rpsblast_cdd gnl|CDD|187703 34 159 + 126 Gaps:11 99.22 128 30.71 9e-12 cd09279 RNase_HI_archaeal_like RNAse HI family that includes Archaeal RNase HI. Ribonuclease H (RNase H) is classified into two evolutionarily unrelated families type 1 (prokaryotic RNase HI eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication repair and transcription. RNase H is widely present in various organisms including bacteria archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology Type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD) residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Most archaeal genomes contain only type 2 RNase H (RNase HII) however a few contain RNase HI as well. Although archaeal RNase HI sequences conserve the DEDD active-site motif they lack other common features important for catalytic function such as the basic protrusion region. Archaeal RNase HI homologs are more closely related to retroviral RNase HI than bacterial and eukaryotic type I RNase H in enzymatic properties.

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 29 159 131 PS50879 none RNase H domain profile. IPR002156
Gene3D 35 161 127 G3DSA:3.30.420.10 none none IPR012337
SUPERFAMILY 32 166 135 SSF53098 none none IPR012337
Pfam 75 159 85 PF13456 none Reverse transcriptase-like none
Pfam 210 258 49 PF12609 none Wound-induced protein IPR022251

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting