Protein : Qrob_P0138790.2 Q. robur
Protein Identifier  ? Qrob_P0138790.2 Organism . Name  Quercus robur
Protein Description  (M=3) PTHR11588//PTHR11588:SF72 - TUBULIN // SUBFAMILY NOT NAMED (PTHR11588:SF72) Alias (in v1)  Qrob_P0723500.1
Code Enzyme  EC:2.4.2.1 Gene Prediction Quality  manual_v1
Protein length 

Sequence

Length: 448  
Kegg Orthology  K07375
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0007017 microtubule-based process Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins.
GO:0003924 GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO:0043234 protein complex A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
GO:0051258 protein polymerization The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
GO:0005874 microtubule Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
GO:0005200 structural constituent of cytoskeleton The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100265052 1 445 + 445 none 99.78 446 98.20 0.0 tubulin beta-4 chain-like
blastp_kegg lcl|tcc:TCM_040994 1 447 + 447 none 100.00 447 97.54 0.0 Beta-6 tubulin isoform 1
blastp_kegg lcl|dosa:Os01t0805900-01 1 447 + 447 none 100.00 447 97.54 0.0 Os01g0805900 BETA-TUBULIN_4 TUB4 Tubulin beta-2 chain (Beta-2 tubulin).
blastp_kegg lcl|osa:4327550 1 447 + 447 none 100.00 447 97.54 0.0 Os01g0805900
blastp_kegg lcl|pda:103713261 1 443 + 443 none 98.88 448 98.42 0.0 tubulin beta-1 chain
blastp_kegg lcl|zma:100381281 1 447 + 447 Gaps:1 89.92 496 97.53 0.0 uncharacterized LOC100381281
blastp_kegg lcl|sbi:SORBI_03g037490 1 447 + 447 none 100.00 447 97.32 0.0 SORBIDRAFT_03g037490 Sb03g037490 hypothetical protein
blastp_kegg lcl|atr:s00010p00119100 1 446 + 446 none 99.78 447 97.31 0.0 AMTR_s00010p00119100 hypothetical protein
blastp_kegg lcl|sita:101768563 1 441 + 441 none 88.55 498 98.41 0.0 tubulin beta-4 chain-like
blastp_kegg lcl|zma:542239 1 447 + 447 Gaps:1 100.00 446 97.53 0.0 TUBB6 tub6 beta-6 tubulin
blastp_pdb 3n2k_D 1 430 + 430 none 96.63 445 86.74 0.0 mol:protein length:445 Tubulin beta chain
blastp_pdb 3n2k_B 1 430 + 430 none 96.63 445 86.74 0.0 mol:protein length:445 Tubulin beta chain
blastp_pdb 3n2g_D 1 430 + 430 none 96.63 445 86.74 0.0 mol:protein length:445 Tubulin beta chain
blastp_pdb 3n2g_B 1 430 + 430 none 96.63 445 86.74 0.0 mol:protein length:445 Tubulin beta chain
blastp_pdb 3hke_D 1 430 + 430 none 96.63 445 86.74 0.0 mol:protein length:445 Tubulin beta chain
blastp_pdb 3hke_B 1 430 + 430 none 96.63 445 86.74 0.0 mol:protein length:445 Tubulin beta chain
blastp_pdb 3hkd_D 1 430 + 430 none 96.63 445 86.74 0.0 mol:protein length:445 Tubulin beta chain
blastp_pdb 3hkd_B 1 430 + 430 none 96.63 445 86.74 0.0 mol:protein length:445 Tubulin beta chain
blastp_pdb 3hkc_D 1 430 + 430 none 96.63 445 86.74 0.0 mol:protein length:445 Tubulin beta chain
blastp_pdb 3hkc_B 1 430 + 430 none 96.63 445 86.74 0.0 mol:protein length:445 Tubulin beta chain
blastp_uniprot_sprot sp|P45960|TBB4_ORYSJ 1 447 + 447 none 100.00 447 97.54 0.0 Tubulin beta-4 chain OS Oryza sativa subsp. japonica GN TUBB4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZPN9|TBB2_ELEIN 1 446 + 446 none 99.55 448 97.31 0.0 Tubulin beta-2 chain OS Eleusine indica GN TUBB2 PE 2 SV 1
blastp_uniprot_sprot sp|Q41783|TBB6_MAIZE 1 447 + 447 Gaps:1 100.00 446 97.53 0.0 Tubulin beta-6 chain OS Zea mays GN TUBB6 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZPN7|TBB4_ELEIN 1 446 + 446 none 100.00 446 97.53 0.0 Tubulin beta-4 chain OS Eleusine indica GN TUBB4 PE 2 SV 1
blastp_uniprot_sprot sp|Q43697|TBB5_MAIZE 1 445 + 445 none 100.00 445 97.53 0.0 Tubulin beta-5 chain OS Zea mays GN TUBB5 PE 1 SV 1
blastp_uniprot_sprot sp|Q43594|TBB1_ORYSJ 1 446 + 446 none 99.78 447 97.53 0.0 Tubulin beta-1 chain OS Oryza sativa subsp. japonica GN TUBB1 PE 2 SV 2
blastp_uniprot_sprot sp|P29514|TBB6_ARATH 1 444 + 444 none 98.89 449 97.30 0.0 Tubulin beta-6 chain OS Arabidopsis thaliana GN TUBB6 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZRB2|TBB1_WHEAT 1 445 + 445 none 100.00 445 97.53 0.0 Tubulin beta-1 chain OS Triticum aestivum GN TUBB1 PE 2 SV 1
blastp_uniprot_sprot sp|Q41785|TBB8_MAIZE 1 445 + 445 none 100.00 445 97.30 0.0 Tubulin beta-8 chain OS Zea mays GN TUBB8 PE 2 SV 1
blastp_uniprot_sprot sp|P93176|TBB_HORVU 1 447 + 447 none 100.00 447 96.42 0.0 Tubulin beta chain OS Hordeum vulgare GN TUBB PE 2 SV 1

36 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 3 222 220 PF00091 none Tubulin/FtsZ family, GTPase domain IPR003008
SMART 47 244 198 SM00864 none Tubulin/FtsZ family, GTPase domain IPR003008
PANTHER 1 440 440 PTHR11588:SF72 none none none
ProSitePatterns 140 146 7 PS00227 none Tubulin subunits alpha, beta, and gamma signature. IPR017975
Gene3D 264 373 110 G3DSA:3.30.1330.20 none none IPR018316
PANTHER 1 440 440 PTHR11588 none none IPR000217
SUPERFAMILY 244 429 186 SSF55307 none none IPR008280
PRINTS 176 189 14 PR01161 none Tubulin signature IPR000217
PRINTS 132 150 19 PR01161 none Tubulin signature IPR000217
PRINTS 151 172 22 PR01161 none Tubulin signature IPR000217
PRINTS 10 30 21 PR01161 none Tubulin signature IPR000217
PRINTS 106 130 25 PR01161 none Tubulin signature IPR000217
PRINTS 190 210 21 PR01161 none Tubulin signature IPR000217
PRINTS 370 398 29 PR01161 none Tubulin signature IPR000217
PRINTS 51 70 20 PR01161 none Tubulin signature IPR000217
PRINTS 93 104 12 PR01161 none Tubulin signature IPR000217
ProSitePatterns 1 4 4 PS00228 "Reactome:REACT_152" Tubulin-beta mRNA autoregulation signal. IPR013838
SUPERFAMILY 1 243 243 SSF52490 none none IPR003008
Pfam 261 382 122 PF03953 none Tubulin C-terminal domain IPR018316
PRINTS 88 99 12 PR01163 none Beta-tubulin signature IPR002453
PRINTS 245 258 14 PR01163 none Beta-tubulin signature IPR002453
PRINTS 347 370 24 PR01163 none Beta-tubulin signature IPR002453
PRINTS 108 126 19 PR01163 none Beta-tubulin signature IPR002453
PRINTS 230 239 10 PR01163 none Beta-tubulin signature IPR002453
PRINTS 212 224 13 PR01163 none Beta-tubulin signature IPR002453
PRINTS 377 388 12 PR01163 none Beta-tubulin signature IPR002453
PRINTS 265 281 17 PR01163 none Beta-tubulin signature IPR002453
PRINTS 412 430 19 PR01163 none Beta-tubulin signature IPR002453
PRINTS 329 343 15 PR01163 none Beta-tubulin signature IPR002453
PRINTS 152 164 13 PR01163 none Beta-tubulin signature IPR002453

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL1_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AMVCC_444 s_1BE1VC_321 4 0 31 lod 3,2 7,4
Bourran2_2003_QTL8_peak_Bud_burst_A4 Qrob_Chr01 1 s_1AH7I_610 s_1BE1VC_321 4,6 0 28 lod 3,5 7,4
Bourran2_2007_QTL6_peak_Bud_burst_3P Qrob_Chr01 1 s_1BE1VC_321 s_1A5JRZ_890 5 0 25 lod 2,4 6
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_nSeqBC*_A4 Qrob_Chr01 1 s_1CFE4C_2114 s_1BDNCB_819 15,25 2 28,5 lod 2,9903 8,3

0 Targeting