Protein : Qrob_P0135740.2 Q. robur
Protein Identifier  ? Qrob_P0135740.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=58) PF13414 - TPR repeat Gene Prediction Quality  validated
Protein length 

Sequence

Length: 375  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_003908 1 355 + 355 Gaps:33 88.25 417 60.05 7e-115 Tetratricopeptide repeat-like superfamily protein putative isoform 1
blastp_kegg lcl|pmum:103334411 1 374 + 374 Gaps:31 100.00 371 59.57 5e-109 uncharacterized LOC103334411
blastp_kegg lcl|mdm:103445476 1 374 + 374 Gaps:16 100.00 366 56.28 3e-107 uncharacterized LOC103445476
blastp_kegg lcl|pop:POPTR_0002s25870g 1 372 + 372 Gaps:16 97.22 395 58.07 5e-107 POPTRDRAFT_553304 hypothetical protein
blastp_kegg lcl|cam:101492841 1 374 + 374 Gaps:39 100.00 363 56.20 1e-105 uncharacterized LOC101492841
blastp_kegg lcl|cam:101508526 1 374 + 374 Gaps:39 100.00 363 55.92 2e-104 uncharacterized LOC101508526
blastp_kegg lcl|pxb:103927960 1 344 + 344 Gaps:21 91.42 373 58.36 2e-104 uncharacterized LOC103927960
blastp_kegg lcl|pxb:103959823 1 374 + 374 Gaps:25 100.00 377 56.76 8e-104 uncharacterized LOC103959823
blastp_kegg lcl|gmx:100788436 1 374 + 374 Gaps:63 100.00 357 55.46 6e-103 uncharacterized LOC100788436
blastp_kegg lcl|cam:101502107 1 372 + 372 Gaps:51 99.44 355 55.24 5e-101 uncharacterized LOC101502107
rpsblast_cdd gnl|CDD|205592 262 330 + 69 Gaps:1 98.55 69 29.41 9e-08 pfam13414 TPR_11 TPR repeat.

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 248 352 105 SSF48452 none none none
Phobius 16 19 4 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
SMART 313 345 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 278 310 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
SMART 243 275 33 SM00386 none HAT (Half-A-TPR) repeats IPR003107
Gene3D 245 351 107 G3DSA:1.25.40.10 none none IPR011990
Phobius 7 15 9 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
Pfam 263 330 68 PF13414 none TPR repeat none
Phobius 1 6 6 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
PANTHER 125 351 227 PTHR26312 none none none
ProSiteProfiles 250 332 83 PS50293 none TPR repeat region circular profile. IPR013026
PANTHER 125 351 227 PTHR26312:SF53 none none none
Phobius 1 19 19 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 20 374 355 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 21 20

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting