Protein : Qrob_P0135380.2 Q. robur
Protein Identifier  ? Qrob_P0135380.2 Organism . Name  Quercus robur
Score  91.1 Score Type  egn
Protein Description  (M=1) K08511 - vesicle-associated membrane protein 72 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 174  
Kegg Orthology  K08511
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.

27 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|gmx:100806307 1 171 + 171 none 71.85 238 90.64 2e-106 vesicle-associated membrane protein 727-like
blastp_kegg lcl|sot:102582814 1 171 + 171 Gaps:2 72.08 240 86.13 6e-105 vesicle-associated membrane protein 727-like
blastp_kegg lcl|sly:101264388 1 171 + 171 Gaps:2 72.08 240 86.13 1e-104 vesicle-associated membrane protein 727-like
blastp_kegg lcl|pxb:103946106 1 171 + 171 none 71.85 238 82.46 4e-103 vesicle-associated membrane protein 727
blastp_kegg lcl|gmx:100777402 1 171 + 171 none 71.85 238 90.64 6e-103 vesicle-associated membrane protein 727-like
blastp_kegg lcl|fve:101313342 1 171 + 171 none 71.85 238 82.46 7e-103 vesicle-associated membrane protein 727-like
blastp_kegg lcl|pmum:103342995 1 171 + 171 none 71.85 238 81.87 2e-102 vesicle-associated membrane protein 727
blastp_kegg lcl|eus:EUTSA_v10010674mg 1 171 + 171 none 71.25 240 86.55 2e-102 hypothetical protein
blastp_kegg lcl|aly:ARALYDRAFT_906838 1 171 + 171 none 71.25 240 85.96 7e-102 ATVAMP727
blastp_kegg lcl|mdm:103408905 1 171 + 171 none 71.85 238 81.87 7e-102 vesicle-associated membrane protein 727
blastp_pdb 2vx8_D 5 105 + 101 none 59.76 169 32.67 7e-15 mol:protein length:169 NUCLEOPORIN-LIKE PROTEIN RIP VESICLE-ASSOCIA
blastp_pdb 2vx8_C 5 105 + 101 none 59.76 169 32.67 7e-15 mol:protein length:169 NUCLEOPORIN-LIKE PROTEIN RIP VESICLE-ASSOCIA
blastp_pdb 2vx8_B 5 105 + 101 none 59.76 169 32.67 7e-15 mol:protein length:169 NUCLEOPORIN-LIKE PROTEIN RIP VESICLE-ASSOCIA
blastp_pdb 2vx8_A 5 105 + 101 none 59.76 169 32.67 7e-15 mol:protein length:169 NUCLEOPORIN-LIKE PROTEIN RIP VESICLE-ASSOCIA
blastp_pdb 2dmw_A 2 108 + 107 none 81.68 131 30.84 1e-14 mol:protein length:131 synaptobrevin-like 1 variant
blastp_uniprot_sprot sp|Q9M376|VA727_ARATH 1 171 + 171 none 71.25 240 85.38 5e-103 Vesicle-associated membrane protein 727 OS Arabidopsis thaliana GN VAMP727 PE 2 SV 1
blastp_uniprot_sprot sp|Q9MAS5|VA726_ARATH 1 170 + 170 Gaps:19 68.64 220 64.90 5e-67 Putative vesicle-associated membrane protein 726 OS Arabidopsis thaliana GN VAMP726 PE 3 SV 2
blastp_uniprot_sprot sp|P47192|VA722_ARATH 1 170 + 170 Gaps:19 68.33 221 64.24 1e-66 Vesicle-associated membrane protein 722 OS Arabidopsis thaliana GN VAMP722 PE 2 SV 2
blastp_uniprot_sprot sp|O48850|VA725_ARATH 1 171 + 171 Gaps:19 53.33 285 64.47 2e-66 Vesicle-associated membrane protein 725 OS Arabidopsis thaliana GN VAMP725 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZTW3|VA721_ARATH 1 170 + 170 Gaps:19 68.95 219 63.58 1e-65 Vesicle-associated membrane protein 721 OS Arabidopsis thaliana GN VAMP721 PE 1 SV 1
blastp_uniprot_sprot sp|O23429|VA724_ARATH 1 171 + 171 Gaps:20 68.92 222 60.78 5e-58 Vesicle-associated membrane protein 724 OS Arabidopsis thaliana GN VAMP724 PE 2 SV 2
blastp_uniprot_sprot sp|Q8VY69|VA723_ARATH 1 173 + 173 Gaps:19 70.97 217 57.79 1e-57 Vesicle-associated membrane protein 723 OS Arabidopsis thaliana GN VAMP723 PE 2 SV 1
blastp_uniprot_sprot sp|O49377|VA711_ARATH 5 170 + 166 Gaps:22 66.67 219 36.99 1e-26 Vesicle-associated membrane protein 711 OS Arabidopsis thaliana GN VAMP711 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LFP1|VA713_ARATH 5 171 + 167 Gaps:23 66.97 221 37.16 1e-25 Vesicle-associated membrane protein 713 OS Arabidopsis thaliana GN VAMP713 PE 2 SV 1
blastp_uniprot_sprot sp|Q86AQ7|VAM7B_DICDI 6 168 + 163 Gaps:21 54.62 260 40.14 4e-24 Vesicle-associated membrane protein 7B OS Dictyostelium discoideum GN vamp7B PE 3 SV 1
rpsblast_cdd gnl|CDD|205947 31 107 + 77 Gaps:1 95.12 82 34.62 2e-19 pfam13774 Longin Regulated-SNARE-like domain. Longin is one of the approximately 26 components required for transporting proteins from the ER to the plasma membrane via the Golgi apparatus. It is necessary for the steps of the transfer from the ER to the Golgi complex. Longins are the only R-SNAREs that are common to all eukaryotes and they are characterized by a conserved N-terminal domain with a profilin-like fold called a longin domain.
rpsblast_kog gnl|CDD|36077 5 171 + 167 Gaps:22 67.74 217 59.86 1e-58 KOG0859 KOG0859 KOG0859 Synaptobrevin/VAMP-like protein [Intracellular trafficking secretion and vesicular transport].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 31 106 76 PF13774 none Regulated-SNARE-like domain IPR010908
ProSiteProfiles 6 133 128 PS50859 none Longin domain profile. IPR010908
Gene3D 132 171 40 G3DSA:1.10.3840.10 none none IPR001388
SUPERFAMILY 6 99 94 SSF64356 none none IPR011012
PANTHER 1 170 170 PTHR21136:SF79 none none none
Gene3D 4 131 128 G3DSA:3.30.450.50 none none IPR010908
PANTHER 1 170 170 PTHR21136 none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 19   Secretory pathway 3 0.578 0.078 NON-PLANT 19