Protein : Qrob_P0135350.2 Q. robur
Protein Identifier  ? Qrob_P0135350.2 Organism . Name  Quercus robur
Score  96.0 Score Type  egn
Protein Description  (M=1) K10743 - ribonuclease H2 subunit A [EC:3.1.26.4] Code Enzyme  EC:3.1.26.4
Gene Prediction Quality  validated Protein length 

Sequence

Length: 256  
Kegg Orthology  K10743
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0016070 RNA metabolic process The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
GO:0004523 RNA-DNA hybrid ribonuclease activity Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103331009 4 255 + 252 none 84.85 297 83.73 1e-155 ribonuclease H2 subunit A
blastp_kegg lcl|pxb:103946109 4 255 + 252 none 82.62 305 82.94 9e-154 ribonuclease H2 subunit A
blastp_kegg lcl|pper:PRUPE_ppa009327mg 4 255 + 252 none 84.85 297 82.94 1e-153 hypothetical protein
blastp_kegg lcl|vvi:100260143 4 255 + 252 none 84.85 297 83.73 6e-153 ribonuclease H2 subunit A-like
blastp_kegg lcl|mdm:103426923 4 255 + 252 none 84.28 299 82.54 1e-152 ribonuclease H2 subunit A-like
blastp_kegg lcl|rcu:RCOM_1539780 4 255 + 252 none 84.28 299 82.94 3e-151 ribonuclease hi large subunit putative (EC:3.1.26.4)
blastp_kegg lcl|csv:101231065 3 255 + 253 none 85.19 297 81.03 1e-150 ribonuclease H2 subunit A-like
blastp_kegg lcl|csv:101210143 3 255 + 253 none 85.19 297 81.03 1e-150 ribonuclease H2 subunit A-like
blastp_kegg lcl|pda:103705595 10 255 + 246 none 83.11 296 82.11 2e-149 ribonuclease H2 subunit A
blastp_kegg lcl|pop:POPTR_0008s02070g 4 255 + 252 none 84.85 297 85.32 2e-149 POPTRDRAFT_765150 ribonuclease HI large subunit family protein
blastp_pdb 3p5j_A 10 205 + 196 Gaps:2 65.78 301 50.00 7e-64 mol:protein length:301 Ribonuclease H2 subunit A
blastp_pdb 3kio_A 10 205 + 196 Gaps:2 65.78 301 50.00 7e-64 mol:protein length:301 Ribonuclease H2 subunit A
blastp_pdb 3puf_P 10 250 + 241 Gaps:18 75.83 302 47.16 2e-63 mol:protein length:302 Ribonuclease H2 subunit A
blastp_pdb 3puf_M 10 250 + 241 Gaps:18 75.83 302 47.16 2e-63 mol:protein length:302 Ribonuclease H2 subunit A
blastp_pdb 3puf_J 10 250 + 241 Gaps:18 75.83 302 47.16 2e-63 mol:protein length:302 Ribonuclease H2 subunit A
blastp_pdb 3puf_G 10 250 + 241 Gaps:18 75.83 302 47.16 2e-63 mol:protein length:302 Ribonuclease H2 subunit A
blastp_pdb 3puf_D 10 250 + 241 Gaps:18 75.83 302 47.16 2e-63 mol:protein length:302 Ribonuclease H2 subunit A
blastp_pdb 3puf_A 10 250 + 241 Gaps:18 75.83 302 47.16 2e-63 mol:protein length:302 Ribonuclease H2 subunit A
blastp_pdb 3p56_D 10 216 + 207 Gaps:6 67.89 299 48.77 2e-62 mol:protein length:299 Ribonuclease H2 subunit A
blastp_pdb 3p56_A 10 216 + 207 Gaps:6 67.89 299 48.77 2e-62 mol:protein length:299 Ribonuclease H2 subunit A
blastp_uniprot_sprot sp|Q9SEZ6|RNH2A_ARATH 4 255 + 252 Gaps:1 84.80 296 72.51 8e-134 Ribonuclease H2 subunit A OS Arabidopsis thaliana GN At2g25100 PE 2 SV 2
blastp_uniprot_sprot sp|Q5U209|RNH2A_RAT 10 205 + 196 Gaps:2 65.78 301 49.49 5e-64 Ribonuclease H2 subunit A OS Rattus norvegicus GN Rnaseh2a PE 2 SV 1
blastp_uniprot_sprot sp|Q9CWY8|RNH2A_MOUSE 10 205 + 196 Gaps:2 65.78 301 50.00 3e-63 Ribonuclease H2 subunit A OS Mus musculus GN Rnaseh2a PE 1 SV 2
blastp_uniprot_sprot sp|O75792|RNH2A_HUMAN 10 250 + 241 Gaps:18 76.59 299 47.16 5e-63 Ribonuclease H2 subunit A OS Homo sapiens GN RNASEH2A PE 1 SV 2
blastp_uniprot_sprot sp|Q2TBT5|RNH2A_BOVIN 10 250 + 241 Gaps:16 76.59 299 47.60 3e-61 Ribonuclease H2 subunit A OS Bos taurus GN RNASEH2A PE 1 SV 1
blastp_uniprot_sprot sp|Q9VPP5|RNH2A_DROME 7 255 + 249 Gaps:14 70.03 347 45.68 9e-59 Ribonuclease H2 subunit A OS Drosophila melanogaster GN CG13690 PE 2 SV 1
blastp_uniprot_sprot sp|Q9U6P6|RNH2A_CAEEL 11 210 + 200 Gaps:8 68.69 297 46.08 6e-49 Ribonuclease H2 subunit A OS Caenorhabditis elegans GN rnh-2 PE 2 SV 1
blastp_uniprot_sprot sp|Q54D13|RNH2A_DICDI 11 216 + 206 Gaps:10 74.74 289 41.67 5e-48 Ribonuclease H2 subunit A OS Dictyostelium discoideum GN rnaseh2A PE 3 SV 1
blastp_uniprot_sprot sp|P53942|RNH2A_YEAST 11 222 + 212 Gaps:18 71.01 307 44.50 4e-38 Ribonuclease H2 subunit A OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RNH201 PE 1 SV 1
blastp_uniprot_sprot sp|Q10236|RNH2A_SCHPO 10 195 + 186 Gaps:21 56.75 326 47.57 1e-37 Ribonuclease H2 subunit A OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rnh201 PE 3 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 10 220 211 PTHR10954 none none IPR001352
Pfam 10 185 176 PF01351 none Ribonuclease HII IPR024567
SUPERFAMILY 10 190 181 SSF53098 none none IPR012337
TIGRFAM 10 186 177 TIGR00729 none TIGR00729: ribonuclease HII IPR004649
Gene3D 10 137 128 G3DSA:3.30.420.10 none none IPR012337
Gene3D 148 190 43 G3DSA:1.10.10.460 none none IPR023160
PANTHER 10 220 211 PTHR10954:SF7 none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1

0 Targeting