Protein : Qrob_P0133720.2 Q. robur
Protein Identifier  ? Qrob_P0133720.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K11129 - H/ACA ribonucleoprotein complex subunit 2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 158  
Kegg Orthology  K11129
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0005730 nucleolus A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.

36 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103338608 1 157 + 157 none 100.00 157 84.08 2e-91 H/ACA ribonucleoprotein complex subunit 2-like protein
blastp_kegg lcl|pper:PRUPE_ppa012736mg 1 157 + 157 none 100.00 157 84.08 2e-91 hypothetical protein
blastp_kegg lcl|gmx:100305515 1 157 + 157 none 100.00 157 85.35 4e-91 uncharacterized LOC100305515
blastp_kegg lcl|vvi:100266210 1 157 + 157 none 100.00 157 84.08 2e-90 H/ACA ribonucleoprotein complex subunit 2-like protein
blastp_kegg lcl|fve:101300443 1 157 + 157 Gaps:1 100.00 158 84.18 3e-89 H/ACA ribonucleoprotein complex subunit 2-like protein-like
blastp_kegg lcl|cic:CICLE_v10022644mg 1 157 + 157 Gaps:1 100.00 156 84.62 7e-89 hypothetical protein
blastp_kegg lcl|cit:102610926 1 157 + 157 Gaps:1 100.00 156 84.62 7e-89 H/ACA ribonucleoprotein complex subunit 2-like protein-like
blastp_kegg lcl|sot:102603701 2 157 + 156 Gaps:1 98.73 157 84.52 1e-88 H/ACA ribonucleoprotein complex subunit 2-like protein-like
blastp_kegg lcl|pop:POPTR_0008s10960g 1 157 + 157 Gaps:2 100.00 155 81.94 2e-87 POPTRDRAFT_564435 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1619060 1 157 + 157 none 100.00 157 84.08 2e-86 H/ACA ribonucleoprotein complex subunit putative
blastp_pdb 2lbx_A 33 152 + 120 none 99.17 121 50.83 1e-38 mol:protein length:121 H/ACA ribonucleoprotein complex subunit 2
blastp_pdb 2lbw_A 33 152 + 120 none 99.17 121 50.00 8e-38 mol:protein length:121 H/ACA ribonucleoprotein complex subunit 2
blastp_pdb 1e7k_B 25 116 + 92 none 71.88 128 38.04 2e-18 mol:protein length:128 15.5 KD RNA BINDING PROTEIN
blastp_pdb 1e7k_A 25 116 + 92 none 71.88 128 38.04 2e-18 mol:protein length:128 15.5 KD RNA BINDING PROTEIN
blastp_pdb 3siv_J 25 116 + 92 none 70.77 130 38.04 2e-18 mol:protein length:130 NHP2-like protein 1
blastp_pdb 3siv_G 25 116 + 92 none 70.77 130 38.04 2e-18 mol:protein length:130 NHP2-like protein 1
blastp_pdb 3siv_D 25 116 + 92 none 70.77 130 38.04 2e-18 mol:protein length:130 NHP2-like protein 1
blastp_pdb 3siv_A 25 116 + 92 none 70.77 130 38.04 2e-18 mol:protein length:130 NHP2-like protein 1
blastp_pdb 3siu_D 25 116 + 92 none 70.77 130 38.04 2e-18 mol:protein length:130 NHP2-like protein 1
blastp_pdb 3siu_A 25 116 + 92 none 70.77 130 38.04 2e-18 mol:protein length:130 NHP2-like protein 1
blastp_uniprot_sprot sp|Q9LEY9|NHP2_ARATH 1 157 + 157 Gaps:1 100.00 156 73.08 4e-76 H/ACA ribonucleoprotein complex subunit 2-like protein OS Arabidopsis thaliana GN At5g08180 PE 1 SV 1
blastp_uniprot_sprot sp|P32495|NHP2_YEAST 1 152 + 152 Gaps:4 100.00 156 46.79 3e-44 H/ACA ribonucleoprotein complex subunit 2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN NHP2 PE 1 SV 2
blastp_uniprot_sprot sp|Q9P7H0|NHP2_SCHPO 20 152 + 133 Gaps:2 85.06 154 50.38 1e-39 H/ACA ribonucleoprotein complex subunit 2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN nhp2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9CRB2|NHP2_MOUSE 3 156 + 154 Gaps:11 93.46 153 41.26 1e-31 H/ACA ribonucleoprotein complex subunit 2 OS Mus musculus GN Nhp2 PE 2 SV 1
blastp_uniprot_sprot sp|Q6P8C4|NHP2_XENTR 15 121 + 107 Gaps:1 72.48 149 53.70 1e-31 H/ACA ribonucleoprotein complex subunit 2-like protein OS Xenopus tropicalis GN nhp2 PE 2 SV 1
blastp_uniprot_sprot sp|Q6NTV9|NHP2_XENLA 20 121 + 102 none 68.46 149 52.94 6e-31 H/ACA ribonucleoprotein complex subunit 2-like protein OS Xenopus laevis GN nhp2 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XXD4|NHP2_CAEEL 25 151 + 127 Gaps:16 69.33 163 49.56 2e-30 Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS Caenorhabditis elegans GN Y48A6B.3 PE 3 SV 1
blastp_uniprot_sprot sp|Q8I7X7|NHP2_BRABE 25 156 + 132 Gaps:11 76.10 159 46.28 2e-30 H/ACA ribonucleoprotein complex subunit 2-like protein OS Branchiostoma belcheri PE 2 SV 1
blastp_uniprot_sprot sp|Q60YI3|NHP2_CAEBR 25 151 + 127 Gaps:16 69.33 163 47.79 3e-30 Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS Caenorhabditis briggsae GN CBG18231 PE 3 SV 1
blastp_uniprot_sprot sp|Q5E950|NHP2_BOVIN 2 156 + 155 Gaps:11 94.12 153 40.28 4e-30 H/ACA ribonucleoprotein complex subunit 2 OS Bos taurus GN NHP2 PE 2 SV 1

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PRINTS 99 111 13 PR00883 none High mobility group-like nuclear protein signature IPR002415
PRINTS 38 53 16 PR00883 none High mobility group-like nuclear protein signature IPR002415
PRINTS 55 65 11 PR00883 none High mobility group-like nuclear protein signature IPR002415
PRINTS 25 38 14 PR00883 none High mobility group-like nuclear protein signature IPR002415
SUPERFAMILY 18 125 108 SSF55315 none none IPR029064
PRINTS 87 97 11 PR00881 none Ribosomal protein L7A/RS6 family signature IPR018492
PRINTS 52 66 15 PR00881 none Ribosomal protein L7A/RS6 family signature IPR018492
PRINTS 97 111 15 PR00881 none Ribosomal protein L7A/RS6 family signature IPR018492
PRINTS 71 84 14 PR00881 none Ribosomal protein L7A/RS6 family signature IPR018492
Pfam 40 123 84 PF01248 none Ribosomal protein L7Ae/L30e/S12e/Gadd45 family IPR004038
Gene3D 22 140 119 G3DSA:3.30.1330.30 none none IPR029064
PANTHER 4 151 148 PTHR23105 none none none
PANTHER 4 151 148 PTHR23105:SF12 none none none
Coils 132 153 22 Coil none none none

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2002_QTL15_peak_Bud_burst_A4 Qrob_Chr10 10 v_7579_71 s_1ATZMJ_189 23,94 0 43,64 lod 3,7 5,4
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
PM_1999_QTL16_peak_Bud_burst_3P Qrob_Chr10 10 s_1B6YNI_505 s_1A1ZO_1322 7,48 0 31,48 lod 4 7,1

0 Targeting