Protein : Qrob_P0132630.2 Q. robur
Protein Identifier  ? Qrob_P0132630.2 Organism . Name  Quercus robur
Score  14.1 Score Type  egn
Protein Description  (M=1) KOG0307//KOG0566//KOG1924//KOG1984//KOG1985//KOG1986//KOG4849 - Vesicle coat complex COPII subunit SEC31 [Intracellular trafficking secretion and vesicular transport]. // Inositol-1 4 5-triphosphate 5-phosphatase (synaptojanin) INP51/INP52/INP53 family [Intracellular trafficking secretion and vesicular transport]. // RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms Cytoskeleton]. // Vesicle coat complex COPII subunit SFB3 [Intracellular trafficking secretion and vesicular transport]. // Vesicle coat complex COPII subunit SEC24/subunit SFB2 [Intracellular trafficking secretion and vesicular transport]. // Vesicle coat complex COPII subunit SEC23 [Intracellular trafficking secretion and vesicular transport]. // mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 435  
Kegg Orthology  K14007
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0006888 ER to Golgi vesicle-mediated transport The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
GO:0030127 COPII vesicle coat One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state.

47 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100265768 10 429 + 420 Gaps:14 37.37 1124 77.62 0.0 protein transport protein Sec24-like At4g32640-like
blastp_kegg lcl|pxb:103956602 25 429 + 405 Gaps:16 37.27 1119 72.18 0.0 protein transport protein Sec24-like At4g32640
blastp_kegg lcl|mdm:103426073 44 429 + 386 Gaps:11 41.27 962 77.08 0.0 protein transport protein Sec24-like At4g32640
blastp_kegg lcl|pxb:103966045 44 429 + 386 Gaps:11 37.17 1068 75.82 0.0 protein transport protein Sec24-like At4g32640
blastp_kegg lcl|pxb:103952220 24 429 + 406 Gaps:17 39.61 1068 72.58 0.0 protein transport protein Sec24-like At4g32640
blastp_kegg lcl|pper:PRUPE_ppa000545mg 17 429 + 413 Gaps:7 37.32 1104 76.70 0.0 hypothetical protein
blastp_kegg lcl|pxb:103955329 46 429 + 384 Gaps:17 37.23 1077 74.81 0.0 protein transport protein Sec24-like At4g32640
blastp_kegg lcl|tcc:TCM_035130 44 429 + 386 Gaps:6 35.42 1101 78.21 0.0 Sec23/Sec24 protein transport family protein
blastp_kegg lcl|pmum:103323831 10 429 + 420 Gaps:10 37.97 1106 75.24 0.0 protein transport protein Sec24-like At4g32640
blastp_kegg lcl|rcu:RCOM_1030630 22 429 + 408 Gaps:25 37.41 1056 75.70 0.0 Protein transport protein Sec24C putative
blastp_pdb 3eh2_C 217 429 + 213 Gaps:7 28.72 766 43.18 1e-50 mol:protein length:766 Protein transport protein Sec24C
blastp_pdb 3eh2_B 217 429 + 213 Gaps:7 28.72 766 43.18 1e-50 mol:protein length:766 Protein transport protein Sec24C
blastp_pdb 3eh2_A 217 429 + 213 Gaps:7 28.72 766 43.18 1e-50 mol:protein length:766 Protein transport protein Sec24C
blastp_pdb 3eg9_B 223 429 + 207 Gaps:7 27.79 770 39.25 2e-44 mol:protein length:770 SEC24 related gene family member D
blastp_pdb 3efo_B 223 429 + 207 Gaps:7 27.79 770 39.25 2e-44 mol:protein length:770 SEC24 related gene family member D
blastp_pdb 3eh1_A 237 429 + 193 Gaps:10 24.63 751 44.32 2e-39 mol:protein length:751 Protein transport protein Sec24B
blastp_pdb 3egx_B 237 429 + 193 Gaps:10 24.73 748 42.70 1e-37 mol:protein length:748 Protein transport protein Sec24A
blastp_pdb 3egd_B 237 429 + 193 Gaps:10 24.73 748 42.70 1e-37 mol:protein length:748 Protein transport protein Sec24A
blastp_pdb 2nut_B 237 429 + 193 Gaps:10 24.57 753 42.70 1e-37 mol:protein length:753 Protein transport protein Sec24A
blastp_pdb 2nup_B 237 429 + 193 Gaps:10 24.57 753 42.70 1e-37 mol:protein length:753 Protein transport protein Sec24A
blastp_uniprot_sprot sp|Q9M081|SC24B_ARATH 7 429 + 423 Gaps:33 38.52 1080 72.36 6e-173 Protein transport protein Sec24-like At4g32640 OS Arabidopsis thaliana GN At4g32640 PE 2 SV 3
blastp_uniprot_sprot sp|Q9M291|SC24C_ARATH 128 429 + 302 Gaps:24 25.73 1096 81.91 2e-147 Protein transport protein Sec24-like CEF OS Arabidopsis thaliana GN CEF PE 2 SV 3
blastp_uniprot_sprot sp|P53992|SC24C_HUMAN 193 429 + 237 Gaps:20 22.76 1094 40.96 4e-53 Protein transport protein Sec24C OS Homo sapiens GN SEC24C PE 1 SV 3
blastp_uniprot_sprot sp|Q9SFU0|SC24A_ARATH 237 429 + 193 Gaps:1 18.50 1038 45.83 3e-52 Protein transport protein Sec24-like At3g07100 OS Arabidopsis thaliana GN At3g07100 PE 2 SV 2
blastp_uniprot_sprot sp|O94855|SC24D_HUMAN 183 429 + 247 Gaps:16 25.10 1032 37.45 4e-48 Protein transport protein Sec24D OS Homo sapiens GN SEC24D PE 1 SV 2
blastp_uniprot_sprot sp|Q1E6U9|SEC24_COCIM 235 425 + 191 Gaps:4 20.28 932 40.21 1e-39 Protein transport protein SEC24 OS Coccidioides immitis (strain RS) GN SEC24 PE 3 SV 2
blastp_uniprot_sprot sp|A1CUC3|SEC24_ASPCL 105 425 + 321 Gaps:53 36.34 919 34.13 1e-39 Protein transport protein sec24 OS Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN sec24 PE 3 SV 1
blastp_uniprot_sprot sp|Q7S4P3|SEC24_NEUCR 236 432 + 197 Gaps:4 20.53 950 38.97 4e-39 Protein transport protein sec24 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN sec24 PE 3 SV 1
blastp_uniprot_sprot sp|Q3U2P1|SC24A_MOUSE 237 429 + 193 Gaps:10 16.97 1090 42.70 4e-39 Protein transport protein Sec24A OS Mus musculus GN Sec24a PE 1 SV 1
blastp_uniprot_sprot sp|A6QNT8|SC24A_BOVIN 237 429 + 193 Gaps:10 16.83 1099 43.24 6e-39 Protein transport protein Sec24A OS Bos taurus GN SEC24A PE 2 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 366 429 64 PF04811 "Reactome:REACT_11123" Sec23/Sec24 trunk domain IPR006896
SUPERFAMILY 366 428 63 SSF53300 none none IPR002035
PANTHER 6 429 424 PTHR13803 none none none
SUPERFAMILY 112 276 165 SSF81995 none none none
SUPERFAMILY 278 364 87 SSF82919 "Reactome:REACT_11123" none IPR006895
Pfam 290 329 40 PF04810 "Reactome:REACT_11123" Sec23/Sec24 zinc finger IPR006895
PANTHER 6 429 424 PTHR13803:SF9 none none none
Gene3D 228 414 187 G3DSA:2.60.40.1670 none none none

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting