Protein : Qrob_P0132620.2 Q. robur
Protein Identifier  ? Qrob_P0132620.2 Organism . Name  Quercus robur
Score  13.1 Score Type  egn
Protein Description  (M=1) PF04811//PF04815//PF08033 - Sec23/Sec24 trunk domain // Sec23/Sec24 helical domain // Sec23/Sec24 beta-sandwich domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 361  
Kegg Orthology  K14007
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006886 intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO:0006888 ER to Golgi vesicle-mediated transport The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
GO:0030127 COPII vesicle coat One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100265768 1 346 + 346 none 30.78 1124 91.04 0.0 protein transport protein Sec24-like At4g32640-like
blastp_kegg lcl|tcc:TCM_035130 1 349 + 349 none 31.70 1101 87.97 0.0 Sec23/Sec24 protein transport family protein
blastp_kegg lcl|pxb:103955329 1 346 + 346 none 32.13 1077 90.17 0.0 protein transport protein Sec24-like At4g32640
blastp_kegg lcl|mdm:103426073 1 346 + 346 none 35.97 962 88.73 0.0 protein transport protein Sec24-like At4g32640
blastp_kegg lcl|pmum:103323831 1 349 + 349 none 31.56 1106 88.25 0.0 protein transport protein Sec24-like At4g32640
blastp_kegg lcl|pper:PRUPE_ppa000545mg 1 349 + 349 none 31.61 1104 88.25 0.0 hypothetical protein
blastp_kegg lcl|cit:102609457 1 349 + 349 none 31.13 1121 85.96 0.0 protein transport protein Sec24-like At4g32640-like
blastp_kegg lcl|cic:CICLE_v10000082mg 1 349 + 349 none 30.69 1137 85.96 0.0 hypothetical protein
blastp_kegg lcl|pxb:103952220 1 349 + 349 none 32.68 1068 87.11 0.0 protein transport protein Sec24-like At4g32640
blastp_kegg lcl|pxb:103966045 1 349 + 349 none 32.68 1068 87.11 0.0 protein transport protein Sec24-like At4g32640
blastp_pdb 3eh2_C 1 349 + 349 Gaps:8 45.30 766 40.92 4e-76 mol:protein length:766 Protein transport protein Sec24C
blastp_pdb 3eh2_B 1 349 + 349 Gaps:8 45.30 766 40.92 4e-76 mol:protein length:766 Protein transport protein Sec24C
blastp_pdb 3eh2_A 1 349 + 349 Gaps:8 45.30 766 40.92 4e-76 mol:protein length:766 Protein transport protein Sec24C
blastp_pdb 3eg9_B 1 339 + 339 Gaps:7 43.90 770 37.28 4e-68 mol:protein length:770 SEC24 related gene family member D
blastp_pdb 3efo_B 1 339 + 339 Gaps:7 43.90 770 37.28 4e-68 mol:protein length:770 SEC24 related gene family member D
blastp_pdb 3egx_B 1 344 + 344 Gaps:9 45.59 748 36.07 5e-64 mol:protein length:748 Protein transport protein Sec24A
blastp_pdb 3egd_B 1 344 + 344 Gaps:9 45.59 748 36.07 5e-64 mol:protein length:748 Protein transport protein Sec24A
blastp_pdb 2nut_B 1 344 + 344 Gaps:9 45.29 753 36.07 6e-64 mol:protein length:753 Protein transport protein Sec24A
blastp_pdb 2nup_B 1 344 + 344 Gaps:9 45.29 753 36.07 6e-64 mol:protein length:753 Protein transport protein Sec24A
blastp_pdb 3eh1_A 1 344 + 344 Gaps:14 45.54 751 36.26 1e-61 mol:protein length:751 Protein transport protein Sec24B
blastp_uniprot_sprot sp|Q9M291|SC24C_ARATH 1 354 + 354 Gaps:2 32.12 1096 82.67 0.0 Protein transport protein Sec24-like CEF OS Arabidopsis thaliana GN CEF PE 2 SV 3
blastp_uniprot_sprot sp|Q9M081|SC24B_ARATH 1 343 + 343 Gaps:12 30.65 1080 83.69 0.0 Protein transport protein Sec24-like At4g32640 OS Arabidopsis thaliana GN At4g32640 PE 2 SV 3
blastp_uniprot_sprot sp|P53992|SC24C_HUMAN 1 349 + 349 Gaps:8 31.72 1094 40.92 4e-73 Protein transport protein Sec24C OS Homo sapiens GN SEC24C PE 1 SV 3
blastp_uniprot_sprot sp|Q9SFU0|SC24A_ARATH 1 349 + 349 Gaps:4 33.43 1038 38.04 9e-69 Protein transport protein Sec24-like At3g07100 OS Arabidopsis thaliana GN At3g07100 PE 2 SV 2
blastp_uniprot_sprot sp|O94855|SC24D_HUMAN 1 339 + 339 Gaps:7 32.75 1032 37.28 8e-66 Protein transport protein Sec24D OS Homo sapiens GN SEC24D PE 1 SV 2
blastp_uniprot_sprot sp|A6QNT8|SC24A_BOVIN 1 344 + 344 Gaps:9 31.03 1099 36.66 6e-63 Protein transport protein Sec24A OS Bos taurus GN SEC24A PE 2 SV 1
blastp_uniprot_sprot sp|O95486|SC24A_HUMAN 1 344 + 344 Gaps:9 31.20 1093 36.07 2e-62 Protein transport protein Sec24A OS Homo sapiens GN SEC24A PE 1 SV 2
blastp_uniprot_sprot sp|Q3U2P1|SC24A_MOUSE 1 344 + 344 Gaps:9 31.28 1090 36.66 3e-62 Protein transport protein Sec24A OS Mus musculus GN Sec24a PE 1 SV 1
blastp_uniprot_sprot sp|Q9USS7|YNB3_SCHPO 1 355 + 355 Gaps:7 39.73 891 34.75 1e-60 Uncharacterized protein C4.03c OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPBC4.03c PE 2 SV 1
blastp_uniprot_sprot sp|O95487|SC24B_HUMAN 1 344 + 344 Gaps:14 26.97 1268 36.26 1e-59 Protein transport protein Sec24B OS Homo sapiens GN SEC24B PE 1 SV 2

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 179 274 96 SSF81995 none none none
Gene3D 1 177 177 G3DSA:3.40.50.410 none none IPR002035
Pfam 1 175 175 PF04811 "Reactome:REACT_11123" Sec23/Sec24 trunk domain IPR006896
PANTHER 1 355 355 PTHR13803:SF9 none none none
SUPERFAMILY 1 177 177 SSF53300 none none IPR002035
PANTHER 1 355 355 PTHR13803 none none none
Pfam 180 264 85 PF08033 "Reactome:REACT_11123" Sec23/Sec24 beta-sandwich domain IPR012990
SUPERFAMILY 275 349 75 SSF81811 "Reactome:REACT_11123" none IPR006900
Pfam 279 343 65 PF04815 "Reactome:REACT_11123" Sec23/Sec24 helical domain IPR006900

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting