Protein : Qrob_P0132190.2 Q. robur
Protein Identifier  ? Qrob_P0132190.2 Organism . Name  Quercus robur
Score  20.1 Score Type  egn
Protein Description  (M=1) KOG0556//KOG1885//KOG2144//KOG2411 - Aspartyl-tRNA synthetase [Translation ribosomal structure and biogenesis]. // Lysyl-tRNA synthetase (class II) [Translation ribosomal structure and biogenesis]. // Tyrosyl-tRNA synthetase cytoplasmic [Translation ribosomal structure and biogenesis]. // Aspartyl-tRNA synthetase mitochondrial [Translation ribosomal structure and biogenesis]. Code Enzyme  EC:6.1.1.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 511  
Kegg Orthology  K04567
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004824 lysine-tRNA ligase activity Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys).
GO:0006430 lysyl-tRNA aminoacylation The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101229946 222 358 + 137 none 37.74 363 89.78 4e-79 lysine--tRNA ligase-like
blastp_kegg lcl|vvi:100262532 221 358 + 138 none 22.29 619 89.86 1e-78 lysyl-tRNA synthetase-like
blastp_kegg lcl|cic:CICLE_v10007700mg 221 358 + 138 none 27.17 508 87.68 2e-78 hypothetical protein
blastp_kegg lcl|pop:POPTR_0018s09780g 221 358 + 138 none 23.27 593 88.41 5e-78 hypothetical protein
blastp_kegg lcl|pop:POPTR_0018s09760g 221 358 + 138 none 23.08 598 88.41 6e-78 POPTRDRAFT_262154 hypothetical protein
blastp_kegg lcl|vvi:100242505 221 358 + 138 none 22.26 620 89.13 7e-78 lysyl-tRNA synthetase-like
blastp_kegg lcl|sot:102596211 221 358 + 138 none 23.04 599 89.13 1e-77 lysine--tRNA ligase-like
blastp_kegg lcl|tcc:TCM_019889 221 358 + 138 none 22.51 613 89.13 2e-77 Lysyl-tRNA synthetase 1 isoform 1
blastp_kegg lcl|cit:102615402 221 358 + 138 none 21.20 651 87.68 2e-77 lysine--tRNA ligase-like
blastp_kegg lcl|sly:101251001 221 358 + 138 none 22.81 605 88.41 7e-77 lysine--tRNA ligase-like
blastp_pdb 3bju_D 221 358 + 138 none 26.49 521 75.36 1e-64 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_C 221 358 + 138 none 26.49 521 75.36 1e-64 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_B 221 358 + 138 none 26.49 521 75.36 1e-64 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 3bju_A 221 358 + 138 none 26.49 521 75.36 1e-64 mol:protein length:521 Lysyl-tRNA synthetase
blastp_pdb 1bbw_A 221 355 + 135 none 26.79 504 63.70 5e-53 mol:protein length:504 PROTEIN (LYSYL-TRNA SYNTHETASE)
blastp_pdb 1bbu_A 221 355 + 135 none 26.79 504 63.70 5e-53 mol:protein length:504 PROTEIN (LYSYL-TRNA SYNTHETASE)
blastp_pdb 3e9i_D 222 357 + 136 none 27.59 493 61.76 3e-51 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_C 222 357 + 136 none 27.59 493 61.76 3e-51 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_B 222 357 + 136 none 27.59 493 61.76 3e-51 mol:protein length:493 Lysyl-tRNA synthetase
blastp_pdb 3e9i_A 222 357 + 136 none 27.59 493 61.76 3e-51 mol:protein length:493 Lysyl-tRNA synthetase
blastp_uniprot_sprot sp|Q6F2U9|SYK_ORYSJ 210 358 + 149 Gaps:3 25.25 602 78.29 8e-76 Lysine--tRNA ligase OS Oryza sativa subsp. japonica GN Os03g0586800 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZPI1|SYK_ARATH 221 358 + 138 none 22.04 626 81.88 4e-74 Lysine--tRNA ligase OS Arabidopsis thaliana GN At3g11710 PE 2 SV 1
blastp_uniprot_sprot sp|Q43776|SYK_SOLLC 221 358 + 138 none 23.47 588 73.19 5e-65 Lysine--tRNA ligase OS Solanum lycopersicum GN LYSRS PE 2 SV 1
blastp_uniprot_sprot sp|Q99MN1|SYK_MOUSE 221 358 + 138 none 23.19 595 76.09 1e-64 Lysine--tRNA ligase OS Mus musculus GN Kars PE 1 SV 1
blastp_uniprot_sprot sp|P37879|SYK_CRIGR 221 358 + 138 none 23.12 597 76.09 3e-64 Lysine--tRNA ligase OS Cricetulus griseus GN KARS PE 1 SV 1
blastp_uniprot_sprot sp|Q8SS56|SYKC_ENCCU 222 358 + 137 none 26.86 510 72.99 6e-64 Probable lysine--tRNA ligase cytoplasmic OS Encephalitozoon cuniculi (strain GB-M1) GN ECU04_0580 PE 3 SV 2
blastp_uniprot_sprot sp|Q15046|SYK_HUMAN 221 358 + 138 none 23.12 597 75.36 7e-64 Lysine--tRNA ligase OS Homo sapiens GN KARS PE 1 SV 3
blastp_uniprot_sprot sp|P15180|SYKC_YEAST 148 357 + 210 Gaps:8 34.18 591 57.92 4e-63 Lysine--tRNA ligase cytoplasmic OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN KRS1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9UUE6|SYKC_SCHPO 222 358 + 137 none 23.18 591 72.99 2e-61 Lysine--tRNA ligase cytoplasmic OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN krs1 PE 3 SV 1
blastp_uniprot_sprot sp|C4V8R9|SYKC_NOSCE 222 368 + 147 Gaps:4 29.38 514 64.90 2e-59 Probable lysine--tRNA ligase cytoplasmic OS Nosema ceranae (strain BRL01) GN NCER_100909 PE 3 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 221 358 138 PTHR22594 "Reactome:REACT_71";signature_desc=ASPARTYL/LYSYL-TRNA SYNTHETASE none IPR018150
Gene3D 137 223 87 G3DSA:1.10.240.10 none none none
Pfam 137 221 85 PF00579 "Reactome:REACT_71" tRNA synthetases class I (W and Y) IPR002305
Pfam 13 115 103 PF00579 "Reactome:REACT_71" tRNA synthetases class I (W and Y) IPR002305
SUPERFAMILY 19 229 211 SSF52374 none none none
Pfam 221 358 138 PF00152 "Reactome:REACT_71" tRNA synthetases class II (D, K and N) IPR004364
Gene3D 12 115 104 G3DSA:3.40.50.620 none none IPR014729
Gene3D 224 357 134 G3DSA:3.30.930.10 none none none
PANTHER 221 358 138 PTHR22594:SF4 none none none
SUPERFAMILY 221 358 138 SSF55681 none none none
ProSiteProfiles 242 356 115 PS50862 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-II family profile. IPR006195
PRINTS 273 289 17 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 257 267 11 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 320 337 18 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149
PRINTS 302 315 14 PR00982 "KEGG:00970+6.1.1.6" Lysyl-tRNA synthetase signature IPR018149

0 Localization

10 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting