Protein : Qrob_P0130990.2 Q. robur
Protein Identifier  ? Qrob_P0130990.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K18163 - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 304  
Kegg Orthology  K18163
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0016740 transferase activity Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0001s07730g 1 303 + 303 Gaps:2 100.00 301 85.05 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1679680 7 303 + 297 none 84.62 351 86.53 0.0 protein with unknown function
blastp_kegg lcl|mdm:103433083 1 303 + 303 none 100.00 303 84.82 0.0 NADH dehydrogenase (ubiquinone) complex I assembly factor 6
blastp_kegg lcl|cam:101494743 1 303 + 303 none 100.00 303 81.19 0.0 NADH dehydrogenase (ubiquinone) complex I assembly factor 6-like
blastp_kegg lcl|gmx:100796423 1 303 + 303 none 100.00 303 80.86 0.0 NADH dehydrogenase (ubiquinone) complex I assembly factor 6-like
blastp_kegg lcl|pvu:PHAVU_011G156400g 1 303 + 303 none 100.00 303 80.86 0.0 hypothetical protein
blastp_kegg lcl|pmum:103337240 1 303 + 303 none 100.00 303 84.82 0.0 NADH dehydrogenase (ubiquinone) complex I assembly factor 6
blastp_kegg lcl|mtr:MTR_5g012060 1 303 + 303 none 96.19 315 80.86 0.0 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa020762mg 1 303 + 303 none 100.00 303 84.49 0.0 hypothetical protein
blastp_kegg lcl|csv:101221645 1 303 + 303 none 100.00 303 85.15 1e-179 NADH dehydrogenase (ubiquinone) complex I assembly factor 6-like
blastp_uniprot_sprot sp|A2AIL4|NDUF6_MOUSE 3 303 + 301 Gaps:14 86.19 333 37.63 9e-59 NADH dehydrogenase (ubiquinone) complex I assembly factor 6 OS Mus musculus GN Ndufaf6 PE 1 SV 1
blastp_uniprot_sprot sp|D3ZN43|NDUF6_RAT 3 303 + 301 Gaps:14 86.19 333 37.98 2e-58 NADH dehydrogenase (ubiquinone) complex I assembly factor 6 OS Rattus norvegicus GN Ndufaf6 PE 3 SV 1
blastp_uniprot_sprot sp|Q330K2|NDUF6_HUMAN 16 303 + 288 Gaps:14 82.28 333 38.69 1e-57 NADH dehydrogenase (ubiquinone) complex I assembly factor 6 OS Homo sapiens GN NDUFAF6 PE 1 SV 2
blastp_uniprot_sprot sp|A7YVD7|NDUF6_BOVIN 2 303 + 302 Gaps:20 85.29 333 39.44 3e-57 NADH dehydrogenase (ubiquinone) complex I assembly factor 6 OS Bos taurus GN NDUFAF6 PE 2 SV 1
blastp_uniprot_sprot sp|Q9VYS5|NDUF6_DROME 16 271 + 256 Gaps:15 75.75 334 41.50 1e-49 NADH dehydrogenase (ubiquinone) complex I assembly factor 6 homolog OS Drosophila melanogaster GN sicily PE 2 SV 1
blastp_uniprot_sprot sp|Q54E48|NDUF6_DICDI 14 275 + 262 Gaps:14 71.91 356 33.98 1e-44 NADH dehydrogenase (ubiquinone) complex I assembly factor 6 homolog OS Dictyostelium discoideum GN DDB_G0291852 PE 3 SV 1
rpsblast_cdd gnl|CDD|201264 21 278 + 258 Gaps:16 97.71 262 29.69 4e-41 pfam00494 SQS_PSY Squalene/phytoene synthase.
rpsblast_cdd gnl|CDD|31750 9 279 + 271 Gaps:12 92.01 288 25.28 1e-21 COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism].
rpsblast_cdd gnl|CDD|163278 29 301 + 273 Gaps:21 96.99 266 25.19 1e-10 TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex but this has not yet been experimentally demonstrated.
rpsblast_kog gnl|CDD|39612 1 303 + 303 Gaps:21 100.00 292 45.55 9e-90 KOG4411 KOG4411 KOG4411 Phytoene/squalene synthetase [Lipid transport and metabolism].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 7 303 297 PTHR21181:SF13 none none none
PANTHER 7 303 297 PTHR21181 none none none
SUPERFAMILY 13 292 280 SSF48576 none none IPR008949
Gene3D 8 278 271 G3DSA:1.10.600.10 none none IPR008949
Pfam 21 278 258 PF00494 none Squalene/phytoene synthase IPR002060

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 41   Mitochondrion 2 0.062 0.788 NON-PLANT 41