Protein : Qrob_P0130610.2 Q. robur
Protein Identifier  ? Qrob_P0130610.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K13091 - RNA-binding protein 39 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 352  
Kegg Orthology  K13091
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0006397 mRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103330955 21 351 + 331 Gaps:17 54.61 575 83.12 2e-173 RNA-binding protein 39
blastp_kegg lcl|pper:PRUPE_ppa002854mg 21 351 + 331 Gaps:17 50.00 628 83.12 5e-173 hypothetical protein
blastp_kegg lcl|fve:101312204 4 351 + 348 Gaps:35 51.04 676 78.26 2e-171 uncharacterized protein LOC101312204
blastp_kegg lcl|tcc:TCM_001305 21 351 + 331 Gaps:18 55.46 568 81.27 2e-170 Splicing factor isoform 1
blastp_kegg lcl|csv:101210603 21 351 + 331 Gaps:22 52.01 598 81.03 5e-170 RNA-binding protein 39-like
blastp_kegg lcl|gmx:100802446 21 351 + 331 Gaps:25 56.47 549 80.97 2e-169 RNA-binding protein 39-like
blastp_kegg lcl|cam:101497964 21 351 + 331 Gaps:22 53.00 583 80.58 3e-169 RNA-binding protein 39-like
blastp_kegg lcl|pvu:PHAVU_009G146500g 21 351 + 331 Gaps:24 51.95 591 81.43 6e-169 hypothetical protein
blastp_kegg lcl|vvi:100243992 21 351 + 331 Gaps:16 58.12 542 80.63 5e-167 RNA-binding protein 39-like
blastp_kegg lcl|mdm:103401826 21 351 + 331 Gaps:20 51.92 599 83.92 9e-165 RNA-binding protein 39
blastp_pdb 2jrs_A 69 159 + 91 Gaps:7 79.63 108 58.14 3e-22 mol:protein length:108 RNA-binding protein 39
blastp_pdb 2dnz_A 66 159 + 94 Gaps:10 90.53 95 53.49 7e-18 mol:protein length:95 Probable RNA-binding protein 23
blastp_pdb 3s6e_B 246 351 + 106 Gaps:19 78.07 114 49.44 1e-15 mol:protein length:114 RNA-binding protein 39
blastp_pdb 3s6e_A 246 351 + 106 Gaps:19 78.07 114 49.44 1e-15 mol:protein length:114 RNA-binding protein 39
blastp_pdb 2lq5_A 246 351 + 106 Gaps:19 78.76 113 49.44 1e-15 mol:protein length:113 RNA-binding protein 39
blastp_pdb 2cqb_A 64 153 + 90 Gaps:4 84.31 102 45.35 3e-13 mol:protein length:102 Peptidyl-prolyl cis-trans isomerase E
blastp_pdb 3mdf_B 72 153 + 82 none 96.47 85 42.68 6e-12 mol:protein length:85 Peptidyl-prolyl cis-trans isomerase E
blastp_pdb 3mdf_A 72 153 + 82 none 96.47 85 42.68 6e-12 mol:protein length:85 Peptidyl-prolyl cis-trans isomerase E
blastp_pdb 2ku7_A 79 153 + 75 none 53.57 140 45.33 9e-12 mol:protein length:140 MLL1 PHD3-Cyp33 RRM chimeric protein
blastp_pdb 3lpy_B 79 153 + 75 none 94.94 79 45.33 1e-11 mol:protein length:79 Peptidyl-prolyl cis-trans isomerase E
blastp_uniprot_sprot sp|Q5RC80|RBM39_PONAB 21 351 + 331 Gaps:54 57.82 524 44.55 3e-55 RNA-binding protein 39 OS Pongo abelii GN RBM39 PE 2 SV 1
blastp_uniprot_sprot sp|Q14498|RBM39_HUMAN 21 351 + 331 Gaps:34 58.30 530 43.04 5e-55 RNA-binding protein 39 OS Homo sapiens GN RBM39 PE 1 SV 2
blastp_uniprot_sprot sp|Q8VH51|RBM39_MOUSE 21 351 + 331 Gaps:34 58.30 530 43.04 5e-55 RNA-binding protein 39 OS Mus musculus GN Rbm39 PE 1 SV 2
blastp_uniprot_sprot sp|O13845|RSD1_SCHPO 21 348 + 328 Gaps:33 49.92 603 36.21 7e-38 RNA-binding protein rsd1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rsd1 PE 1 SV 2
blastp_uniprot_sprot sp|Q86U06|RBM23_HUMAN 21 266 + 246 Gaps:24 51.94 439 41.67 7e-30 Probable RNA-binding protein 23 OS Homo sapiens GN RBM23 PE 1 SV 1
blastp_uniprot_sprot sp|Q44554|RBPB_NOSS1 81 153 + 73 Gaps:2 70.87 103 46.58 9e-14 Putative RNA-binding protein RbpB OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN rbpB PE 3 SV 3
blastp_uniprot_sprot sp|Q57014|RBPA_SYNY3 81 153 + 73 Gaps:2 72.28 101 46.58 2e-13 Putative RNA-binding protein RbpA OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN rbpA PE 3 SV 3
blastp_uniprot_sprot sp|Q9WX37|RBPE_NOSS1 81 182 + 102 Gaps:13 93.94 99 45.16 9e-13 Putative RNA-binding protein RbpE OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN rbpE PE 3 SV 3
blastp_uniprot_sprot sp|P19018|TRA2_DROME 86 161 + 76 Gaps:1 29.17 264 36.36 5e-11 Transformer-2 sex-determining protein OS Drosophila melanogaster GN tra2 PE 1 SV 1
blastp_uniprot_sprot sp|Q5RF83|CIRBP_PONAB 80 152 + 73 Gaps:2 42.44 172 42.47 2e-10 Cold-inducible RNA-binding protein OS Pongo abelii GN CIRBP PE 2 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 80 158 79 PTHR24012 none none none
PANTHER 21 60 40 PTHR24012 none none none
SMART 80 153 74 SM00360 none RNA recognition motif IPR000504
Gene3D 254 350 97 G3DSA:3.30.70.330 none none IPR012677
ProSiteProfiles 79 157 79 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
PANTHER 21 60 40 PTHR24012:SF39 none none none
PANTHER 267 351 85 PTHR24012 none none none
Gene3D 18 156 139 G3DSA:3.30.70.330 none none IPR012677
TIGRFAM 21 351 331 TIGR01622 none SF-CC1: splicing factor, CC1-like family IPR006509
SUPERFAMILY 79 167 89 SSF54928 none none none
SUPERFAMILY 276 347 72 SSF54928 none none none
Pfam 81 151 71 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
Pfam 170 271 102 PF15519 none linker between RRM2 and RRM3 domains in RBM39 protein IPR029123
PANTHER 267 351 85 PTHR24012:SF39 none none none
PANTHER 80 158 79 PTHR24012:SF39 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting