Protein : Qrob_P0126930.2 Q. robur
Protein Identifier  ? Qrob_P0126930.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR32370:SF17 - ROOT PHOTOTROPISM PROTEIN 2 (PTHR32370:SF17) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 587  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0004871 signal transducer activity Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
GO:0009638 phototropism The movement of an organism, or part of an organism, in response to a light stimulus, usually toward or away from it.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_042307 1 586 + 586 Gaps:14 100.00 576 79.17 0.0 Phototropic-responsive NPH3 family protein
blastp_kegg lcl|sot:102602517 1 586 + 586 Gaps:16 100.00 576 77.60 0.0 root phototropism protein 2-like
blastp_kegg lcl|vvi:100257120 1 586 + 586 Gaps:18 100.00 572 79.55 0.0 root phototropism protein 2-like
blastp_kegg lcl|sly:101259171 1 586 + 586 Gaps:16 100.00 576 77.60 0.0 root phototropism protein 2-like
blastp_kegg lcl|cit:102624352 8 586 + 579 Gaps:18 99.14 584 79.27 0.0 root phototropism protein 2-like
blastp_kegg lcl|pper:PRUPE_ppa003347mg 1 586 + 586 Gaps:5 100.00 583 77.19 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0013s15500g 1 586 + 586 Gaps:12 100.00 578 78.03 0.0 POPTRDRAFT_571926 ROOT PHOTOTROPISM 2 family protein
blastp_kegg lcl|pmum:103338129 1 586 + 586 Gaps:6 100.00 584 77.05 0.0 root phototropism protein 2
blastp_kegg lcl|fve:101315218 3 586 + 584 Gaps:8 99.83 581 76.55 0.0 root phototropism protein 2-like
blastp_kegg lcl|csv:101210042 1 586 + 586 Gaps:18 100.00 582 75.43 0.0 root phototropism protein 2-like
blastp_uniprot_sprot sp|Q682S0|RPT2_ARATH 11 586 + 576 Gaps:16 97.81 593 73.10 0.0 Root phototropism protein 2 OS Arabidopsis thaliana GN RPT2 PE 1 SV 2
blastp_uniprot_sprot sp|Q66GP0|Y5738_ARATH 11 586 + 576 Gaps:66 98.68 604 42.11 1e-141 BTB/POZ domain-containing protein At5g67385 OS Arabidopsis thaliana GN At5g67385 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FKB6|Y5880_ARATH 20 559 + 540 Gaps:74 89.25 614 38.50 3e-118 BTB/POZ domain-containing protein At5g48800 OS Arabidopsis thaliana GN At5g48800 PE 2 SV 1
blastp_uniprot_sprot sp|O82253|SETH6_ARATH 4 514 + 511 Gaps:71 86.30 635 37.23 9e-105 BTB/POZ domain-containing protein SETH6 OS Arabidopsis thaliana GN SETH6 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SA69|Y1301_ARATH 10 563 + 554 Gaps:78 92.74 634 34.35 4e-104 BTB/POZ domain-containing protein At1g03010 OS Arabidopsis thaliana GN At1g03010 PE 2 SV 1
blastp_uniprot_sprot sp|Q9S9Q9|Y1044_ARATH 12 572 + 561 Gaps:98 94.89 665 34.39 6e-104 BTB/POZ domain-containing protein At1g30440 OS Arabidopsis thaliana GN At1g30440 PE 1 SV 2
blastp_uniprot_sprot sp|Q9C9Z7|Y3857_ARATH 22 562 + 541 Gaps:63 90.44 617 34.95 4e-100 BTB/POZ domain-containing protein At3g08570 OS Arabidopsis thaliana GN At3g08570 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FNB3|Y5360_ARATH 21 534 + 514 Gaps:61 93.91 591 36.58 2e-96 Putative BTB/POZ domain-containing protein At5g13600 OS Arabidopsis thaliana GN At5g13600 PE 3 SV 1
blastp_uniprot_sprot sp|Q9C9Z0|Y3866_ARATH 22 568 + 547 Gaps:48 92.27 582 35.94 5e-96 Putative BTB/POZ domain-containing protein At3g08660 OS Arabidopsis thaliana GN At3g08660 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LYW0|Y5325_ARATH 12 478 + 467 Gaps:56 86.66 592 35.48 5e-95 BTB/POZ domain-containing protein At5g03250 OS Arabidopsis thaliana GN At5g03250 PE 2 SV 1
rpsblast_cdd gnl|CDD|202505 183 439 + 257 Gaps:10 100.00 249 45.78 5e-78 pfam03000 NPH3 NPH3 family. Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1) a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family apparently specific to higher plants and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay.
rpsblast_cdd gnl|CDD|197585 30 125 + 96 Gaps:5 100.00 97 31.96 4e-09 smart00225 BTB Broad-Complex Tramtrack and Bric a brac. Domain in Broad-Complex Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
rpsblast_cdd gnl|CDD|201372 23 114 + 92 Gaps:5 86.14 101 36.78 5e-08 pfam00651 BTB BTB/POZ domain. The BTB (for BR-C ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
rpsblast_kog gnl|CDD|39642 25 156 + 132 Gaps:14 22.42 571 31.25 7e-09 KOG4441 KOG4441 KOG4441 Proteins containing BTB/POZ and Kelch domains involved in regulatory/signal transduction processes [Signal transduction mechanisms General function prediction only].

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 586 586 PTHR32370:SF17 "UniPathway:UPA00143";signature_desc=ROOT PHOTOTROPISM PROTEIN 2 (PTHR32370:SF17) none IPR029958
SUPERFAMILY 17 114 98 SSF54695 none none IPR011333
Gene3D 12 114 103 G3DSA:3.30.710.10 none none none
Pfam 24 114 91 PF00651 none BTB/POZ domain IPR013069
SMART 29 125 97 SM00225 none Broad-Complex, Tramtrack and Bric a brac IPR000210
Pfam 184 438 255 PF03000 "UniPathway:UPA00143" NPH3 family IPR027356
PANTHER 1 586 586 PTHR32370 none none none
ProSiteProfiles 184 463 280 PS51649 "UniPathway:UPA00143" NPH3 domain profile. IPR027356
ProSiteProfiles 29 97 69 PS50097 none BTB domain profile. IPR000210

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 106   Mitochondrion 4 0.047 0.611 NON-PLANT 106